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Endo16, a lineage-specific protein of the sea urchin embryo, is first expressed just prior to gastrulation. , Nocente-McGrath C, Brenner CA, Ernst SG., Dev Biol. November 1, 1989; 136 (1): 264-72.
Altered cell fate in LiCl-treated sea urchin embryos. , Nocente-McGrath C, McIsaac R, Ernst SG., Dev Biol. October 1, 1991; 147 (2): 445-50.
Complexity and organization of DNA-protein interactions in the 5''-regulatory region of an endoderm-specific marker gene in the sea urchin embryo. , Yuh CH, Ransick A, Martinez P , Britten RJ, Davidson EH ., Mech Dev. August 1, 1994; 47 (2): 165-86.
Endo16, a large multidomain protein found on the surface and ECM of endodermal cells during sea urchin gastrulation, binds calcium. , Soltysik-Española M, Klinzing DC, Pfarr K, Burke RD , Ernst SG., Dev Biol. September 1, 1994; 165 (1): 73-85.
Molecular cloning, characterization, and genetic mapping of the cDNA coding for a novel secretory protein of mouse. Demonstration of alternative splicing in skin and cartilage. , Bhalerao J, Tylzanowski P, Filie JD, Kozak CA, Merregaert J., J Biol Chem. July 7, 1995; 270 (27): 16385-94.
Micromeres are required for normal vegetal plate specification in sea urchin embryos. , Ransick A, Davidson EH ., Development. October 1, 1995; 121 (10): 3215-22.
Modular cis-regulatory organization of Endo16, a gut-specific gene of the sea urchin embryo. , Yuh CH, Davidson EH ., Development. April 1, 1996; 122 (4): 1069-82.
Modular cis-regulatory organization of developmentally expressed genes: two genes transcribed territorially in the sea urchin embryo, and additional examples. , Kirchhamer CV, Yuh CH, Davidson EH ., Proc Natl Acad Sci U S A. September 3, 1996; 93 (18): 9322-8.
Alternative splicing of the Endo16 transcript produces differentially expressed mRNAs during sea urchin gastrulation. , Godin RE, Urry LA, Ernst SG., Dev Biol. October 10, 1996; 179 (1): 148-59.
Developmental expression of synthetic cis-regulatory systems composed of spatial control elements from two different genes. , Kirchhamer CV, Bogarad LD, Davidson EH ., Proc Natl Acad Sci U S A. November 26, 1996; 93 (24): 13849-54.
Quantitative functional interrelations within the cis-regulatory system of the S. purpuratus Endo16 gene. , Yuh CH, Moore JG, Davidson EH ., Development. December 1, 1996; 122 (12): 4045-56.
Specification of endoderm in the sea urchin embryo. , Godin RE, Klinzing DC, Porcaro WA, Ernst SG., Mech Dev. September 1, 1997; 67 (1): 35-47.
Green Fluorescent Protein in the sea urchin: new experimental approaches to transcriptional regulatory analysis in embryos and larvae. , Arnone MI , Bogarad LD, Collazo A, Kirchhamer CV, Cameron RA , Rast JP, Gregorians A, Davidson EH ., Development. November 1, 1997; 124 (22): 4649-59.
Late specification of Veg1 lineages to endodermal fate in the sea urchin embryo. , Ransick A, Davidson EH ., Dev Biol. March 1, 1998; 195 (1): 38-48.
Cis-regulation downstream of cell type specification: a single compact element controls the complex expression of the CyIIa gene in sea urchin embryos. , Arnone MI , Martin EL, Davidson EH ., Development. April 1, 1998; 125 (8): 1381-95.
Cis-regulatory logic in the endo16 gene: switching from a specification to a differentiation mode of control. , Yuh CH, Bolouri H, Davidson EH ., Development. March 1, 2001; 128 (5): 617-29.
Correct Expression of spec2a in the sea urchin embryo requires both Otx and other cis-regulatory elements. , Yuh CH, Li X, Davidson EH , Klein WH ., Dev Biol. April 15, 2001; 232 (2): 424-38.
Evidence for a mesodermal embryonic regulator of the sea urchin CyIIa gene. , Martin EL, Consales C, Davidson EH , Arnone MI ., Dev Biol. August 1, 2001; 236 (1): 46-63.
Modeling DNA sequence-based cis-regulatory gene networks. , Bolouri H, Davidson EH ., Dev Biol. June 1, 2002; 246 (1): 2-13.
Conservation of Endo16 expression in sea urchins despite evolutionary divergence in both cis and trans-acting components of transcriptional regulation. , Romano LA , Wray GA ., Development. September 1, 2003; 130 (17): 4187-99.
cis-Regulatory activity of randomly chosen genomic fragments from the sea urchin. , Cameron RA , Oliveri P , Wyllie J, Davidson EH ., Gene Expr Patterns. March 1, 2004; 4 (2): 205-13.
Brn1/2/4, the predicted midgut regulator of the endo16 gene of the sea urchin embryo. , Yuh CH, Dorman ER, Davidson EH ., Dev Biol. May 15, 2005; 281 (2): 286-98.
Evolutionary analysis of the well characterized endo16 promoter reveals substantial variation within functional sites. , Balhoff JP, Wray GA ., Proc Natl Acad Sci U S A. June 14, 2005; 102 (24): 8591-6.
Endo16 is required for gastrulation in the sea urchin Lytechinus variegatus. , Romano LA , Wray GA ., Dev Growth Differ. October 1, 2006; 48 (8): 487-97.
A global view of gene expression in lithium and zinc treated sea urchin embryos: new components of gene regulatory networks. , Poustka AJ, Kühn A, Groth D, Weise V, Yaguchi S , Burke RD , Herwig R, Lehrach H, Panopoulou G., Genome Biol. January 1, 2007; 8 (5): R85.
Sequential logic model deciphers dynamic transcriptional control of gene expressions. , Yeo ZX, Wong ST, Arjunan SN, Piras V, Tomita M, Selvarajoo K, Giuliani A, Tsuchiya M., PLoS One. August 22, 2007; 2 (8): e776.
Two ParaHox genes, SpLox and SpCdx, interact to partition the posterior endoderm in the formation of a functional gut. , Cole AG, Rizzo F, Martinez P , Fernandez-Serra M, Arnone MI ., Development. February 1, 2009; 136 (4): 541-9.
Gene regulatory network interactions in sea urchin endomesoderm induction. , Sethi AJ, Angerer RC , Angerer LM ., PLoS Biol. February 3, 2009; 7 (2): e1000029.
Population genetics of cis-regulatory sequences that operate during embryonic development in the sea urchin Strongylocentrotus purpuratus. , Garfield D, Haygood R, Nielsen WJ, Wray GA ., Evol Dev. January 1, 2012; 14 (2): 152-67.
bicaudal-C is required for the formation of anterior neurogenic ectoderm in the sea urchin embryo. , Yaguchi S , Yaguchi J, Inaba K., Sci Rep. October 31, 2014; 4 6852.
Characterization and expression analysis of Galnts in developing Strongylocentrotus purpuratus embryos. , Famiglietti AL, Wei Z, Beres TM, Milac AL, Tran DT, Patel D, Angerer RC , Angerer LM , Tabak LA., PLoS One. April 17, 2017; 12 (4): e0176479.
Global analysis of primary mesenchyme cell cis-regulatory modules by chromatin accessibility profiling. , Shashikant T, Khor JM, Ettensohn CA ., BMC Genomics. March 20, 2018; 19 (1): 206.
How Does the Regulatory Genome Work? , Istrail S, Peter IS ., J Comput Biol. July 1, 2019; 26 (7): 685-695.
Coup-TF: A maternal factor essential for differentiation along the embryonic axes in the sea urchin Paracentrotus lividus. , Tsironis I, Paganos P , Gouvi G, Tsimpos P, Stamopoulou A, Arnone MI , Flytzanis CN., Dev Biol. July 1, 2021; 475 131-144.