Eyes and negative phototaxis in Biol Open. June 10, 2019; 8 (6):
Analysis of sea star larval regeneration reveals conserved processes of whole-body regeneration across the metazoa. Cary GA , Cary GA , Wolff A , Zueva O , Pattinato J, Hinman VF ., BMC Biol. February 22, 2019; 17 (1): 16.
Exposure, vulnerability, and resiliency of French Polynesian coral reefs to environmental disturbances. Sci Rep. January 31, 2019; 9 (1): 1027.
Putative chemosensory receptors are differentially expressed in the sensory organs of male and female crown-of-thorns starfish, Acanthaster planci. BMC Genomics. November 29, 2018; 19 (1): 853.
Structural design of the echinoid''s trabecular system. PLoS One. September 27, 2018; 13 (9): e0204432.
Impaired recovery of the Great Barrier Reef under cumulative stress. Sci Adv. July 18, 2018; 4 (7): eaar6127.
A disassembly-driven mechanism explains F- Elife. January 19, 2018; 7
Sea cucumbers reduce chromophoric dissolved organic matter in aquaculture tanks. PeerJ. January 1, 2018; 6 e4344.
Immanent conditions determine imminent collapses: nutrient regimes define the resilience of macroalgal communities. Proc Biol Sci. March 29, 2017; 284 (1851):
The SpTransformer Gene Family (Formerly Smith LC , Lun CM., Front Immunol. March 13, 2017; 8 725.
Identification and functional characterisation of 5-HT4 receptor in sea cucumber Apostichopus japonicus (Selenka). Lv Z , Wu C., Sci Rep. January 6, 2017; 7 40247.
Perturbation of gut bacteria induces a coordinated cellular immune response in the purple sea urchin Buckley KM , Schrankel CS, Schuh NW, Hibino T, Solek CM, Bae K, Wang G, Rast JP., Immunol Cell Biol. October 1, 2016; 94 (9): 861-874.
Two new competing pathways establish the threshold for cyclin-B- Kishimoto T ., J Cell Sci. August 15, 2016; 129 (16): 3153-66.
Burke RD ., Elife. July 30, 2016; 5
In Vivo Anti-Cancer Mechanism of Low-Molecular-Weight Fucosylated Chondroitin Sulfate (LFCS) from Sea Cucumber Cucumaria frondosa. Zhang L , Yu G., Molecules. May 12, 2016; 21 (5):
Distinct mechanisms eliminate mother and daughter centrioles in meiosis of starfish oocytes. J Cell Biol. March 28, 2016; 212 (7): 815-27.
A workflow to process 3D+time microscopy images of developing organisms and reconstruct their cell lineage. Nat Commun. February 25, 2016; 7 8674.
Accounting for size-specific predation improves our ability to predict the strength of a trophic cascade. Ecol Evol. January 22, 2016; 6 (4): 1041-53.
Best Dressed Test: A Study of the Covering Behavior of the Collector Urchin Tripneustes gratilla. PLoS One. January 1, 2016; 11 (4): e0153581.
An Exon-Capture System for the Entire Class Ophiuroidea. O'Hara TD , Hunjan S, Nilsen R, Moussalli A., Mol Biol Evol. January 1, 2016; 33 (1): 281-94.
Wilson LG , Pascal R, Colin R, Pichlo M, Rennhack A, Brenker C, Kaupp UB., Nat Commun. August 17, 2015; 6 7985.
Comparative Study of Regulatory Circuits in Two Sea Urchin Species Reveals Tight Control of Timing and High Conservation of Expression Dynamics. PLoS Genet. July 31, 2015; 11 (7): e1005435.
Logics and properties of a genetic regulatory program that drives embryonic Su YH , Arnone MI ., Elife. July 28, 2015; 4
Evolution of extreme stomach pH in bilateria inferred from gastric alkalization mechanisms in basal deuterostomes. Hu MY , Tseng YC, Guh YJ, Chen YC, Yu JK, Su YH , Hwang PP., Sci Rep. June 8, 2015; 5 10421.
A facile synthesis and Eur J Med Chem. April 13, 2015; 94 237-51.
Operationalizing resilience for adaptive coral reef management under global environmental change. Glob Chang Biol. January 1, 2015; 21 (1): 48-61.
Understanding the Spatio-Temporal Response of Coral Reef Fish Communities to Natural Disturbances: Insights from Beta-Diversity Decomposition. PLoS One. January 1, 2015; 10 (9): e0138696.
In silico determination of the effect of multi-target drugs on calcium dynamics signaling network underlying sea urchin Darszon A , Guerrero A, Martínez-Mekler G., PLoS One. August 27, 2014; 9 (8): e104451.
A Dynamic Energy Budget (DEB) model for the keystone predator Pisaster ochraceus. PLoS One. August 27, 2014; 9 (8): e104658.
High density and ligand affinity confer ultrasensitive signal detection by a J Cell Biol. August 18, 2014; 206 (4): 541-57.
Mar Drugs. June 10, 2014; 12 (6): 3560-73.
Modelization of the regulation of protein synthesis following fertilization in sea urchin shows requirement of two processes: a destabilization of eIF4E: Mulner-Lorillon O , Morales J , Flament D, Glippa V, Bourdon J, Gosselin P, Siegel A, Cormier P , Bellé R., Front Genet. May 6, 2014; 5 117.
Oversimplification and overstandardization in biological methods: ScientificWorldJournal. January 1, 2014; 2014 936202.
Expression of skeletogenic genes during arm regeneration in the brittle star Amphiura filiformis. Dylus DV , Oliveri P ., Gene Expr Patterns. December 1, 2013; 13 (8): 464-72.
Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase. Ponferrada VG , James-Zorn C , Burns KA , Fortriede JD , Dahdul WM, Vize PD , Zorn AM ., J Biomed Semantics. October 18, 2013; 4 (1): 31.
Towards 3D in silico modeling of the sea urchin embryonic development. J Chem Biol. September 13, 2013; 7 (1): 17-28.
Sea urchin Coffman JA ., Biol Open. March 25, 2013; 2 (5): 472-8.
A simple method for estimating informative node age priors for the fossil calibration of molecular divergence time analyses. PLoS One. January 1, 2013; 8 (6): e66245.
What mechanism of niche segregation allows the coexistence of sympatric sibling rhinolophid bats? Front Zool. November 13, 2012; 9 (1): 30.
Comparative genomics of PLoS One. October 25, 2012; 7 (10): e47972.
Evolution of a novel PLoS One. January 1, 2012; 7 (5): e37520.
Semi-automated image analysis for the assessment of megafaunal densities at the Arctic deep-sea observatory HAUSGARTEN. PLoS One. January 1, 2012; 7 (6): e38179.
Predator crown-of-thorns starfish (Acanthaster planci) outbreak, mass mortality of corals, and cascading effects on reef fish and benthic communities. PLoS One. January 1, 2012; 7 (10): e47363.
Beyond bilateral symmetry: geometric morphometric methods for any type of symmetry. BMC Evol Biol. September 29, 2011; 11 280.
Discrete dynamics model for the Darszon A , Martínez-Mekler G., PLoS One. January 1, 2011; 6 (8): e22619.
Ancestral regulatory circuits governing Range R , Oisel A, Besnardeau L, Wincker P, Lepage T ., PLoS Genet. December 23, 2010; 6 (12): e1001259.
Embryonic, larval, and PLoS One. March 22, 2010; 5 (3): e9654.
MGEScan-non-LTR: computational identification and classification of autonomous non-LTR retrotransposons in eukaryotic genomes. Nucleic Acids Res. November 1, 2009; 37 (21): e143.
Monte Carlo analysis of an ODE Model of the Sea Urchin BMC Syst Biol. August 23, 2009; 3 83.
A method for identifying alternative or cryptic donor splice sites within gene and mRNA sequences. Comparisons among sequences from vertebrates, echinoderms and other groups. Buckley KM , Florea LD, Smith LC ., BMC Genomics. July 16, 2009; 10 318.
