Papers associated with LOC583082 (and LOC115925415)

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	Characterization of aporphine alkaloids by electrospray ionization tandem mass spectrometry and density functional theory calculations., Carnevale Neto F, Andréo MA, Raftery D, Lopes JLC, Lopes NP, Castro-Gamboa I, Lameiro de Noronha Sales Maia BH, Costa EV, Vessecchi R., Rapid Commun Mass Spectrom. September 1, 2020;
	Quantitative 3D structural analysis of the cellular microstructure of sea urchin spines (II): Large-volume structural analysis., Chen H, Yang T, Wu Z, Deng Z, Zhu Y, Li L., Acta Biomater. April 15, 2020; 107 218-231.
	Genetic manipulation of the pigment pathway in a sea urchin reveals distinct lineage commitment prior to metamorphosis in the bilateral to radial body plan transition., Wessel GM, Kiyomoto M, Shen TL, Yajima M., Sci Rep. February 6, 2020; 10 (1): 1973.
	STarFish: A Stacked Ensemble Target Fishing Approach and its Application to Natural Products., Cockroft NT, Cheng X, Fuchs JR., J Chem Inf Model. November 25, 2019; 59 (11): 4906-4920.
	Developmental transcriptomes of the sea star, Patiria miniata, illuminate how gene expression changes with evolutionary distance., Gildor T, Cary GA, Cary GA, Lalzar M, Hinman VF, Ben-Tabou de-Leon S., Sci Rep. November 7, 2019; 9 (1): 16201.
	The sponge microbiome within the greater coral reef microbial metacommunity., Cleary DFR, Swierts T, Coelho FJRC, Polónia ARM, Huang YM, Ferreira MRS, Putchakarn S, Carvalheiro L, van der Ent E, Ueng JP, Gomes NCM, de Voogd NJ., Nat Commun. April 9, 2019; 10 (1): 1644.
	Exposure, vulnerability, and resiliency of French Polynesian coral reefs to environmental disturbances., Vercelloni J, Kayal M, Chancerelle Y, Planes S., Sci Rep. January 31, 2019; 9 (1): 1027.
	Intergeneric Relationships within the Early-Diverging Angiosperm Family Nymphaeaceae Based on Chloroplast Phylogenomics., He D, Gichira AW, Li Z, Nzei JM, Guo Y, Wang Q, Chen J., Int J Mol Sci. November 28, 2018; 19 (12):
	Cytoplasmic flows in starfish oocytes are fully determined by cortical contractions., Klughammer N, Bischof J, Schnellbächer ND, Callegari A, Lénárt P, Schwarz US., PLoS Comput Biol. November 15, 2018; 14 (11): e1006588.
	CRISPRStudio: A User-Friendly Software for Rapid CRISPR Array Visualization., Dion MB, Labrie SJ, Shah SA, Moineau S., Viruses. November 1, 2018; 10 (11):
	Translatome analysis at the egg-to-embryo transition in sea urchin., Chassé H, Aubert J, Boulben S, Le Corguillé G, Corre E, Cormier P, Morales J., Nucleic Acids Res. May 18, 2018; 46 (9): 4607-4621.
	Characteristics of the Copper,Zinc Superoxide Dismutase of a Hadal Sea Cucumber (Paelopatides sp.) from the Mariana Trench., Li Y, Kong X, Chen J, Liu H, Zhang H., Mar Drugs. May 18, 2018; 16 (5):
	Developmental transcriptomics of the brittle star Amphiura filiformis reveals gene regulatory network rewiring in echinoderm larval skeleton evolution., Dylus DV, Czarkwiani A, Blowes LM, Elphick MR, Oliveri P., Genome Biol. February 28, 2018; 19 (1): 26.
	In vitro and in silico validation of CA3 and FHL1 downregulation in oral cancer., Pereira CM, de Carvalho AC, da Silva FR, Melendez ME, Lessa RC, Andrade VCC, Kowalski LP, Vettore AL, Carvalho AL., BMC Cancer. February 17, 2018; 18 (1): 193.
	Bioaccumulation of persistent and emerging pollutants in wild sea urchin Paracentrotus lividus., Rocha AC, Camacho C, Eljarrat E, Peris A, Aminot Y, Readman JW, Boti V, Nannou C, Marques A, Nunes ML, Almeida CM., Environ Res. February 1, 2018; 161 354-363.
	ATLANTIC MAMMAL TRAITS: a data set of morphological traits of mammals in the Atlantic Forest of South America., Gonçalves F, Bovendorp RS, Beca G, Bello C, Costa-Pereira R, Muylaert RL, Rodarte RR, Villar N, Souza R, Graipel ME, Cherem JJ, Faria D, Baumgarten J, Alvarez MR, Vieira EM, Cáceres N, Pardini R, Leite YLR, Costa LP, Mello MAR, Fischer E, Passos FC, Varzinczak LH, Prevedello JA, Cruz-Neto AP, Carvalho F, Percequillo AR, Paviolo A, Nava A, Duarte JMB, de la Sancha NU, Bernard E, Morato RG, Ribeiro JF, Becker RG, Paise G, Tomasi PS, Vélez-Garcia F, Melo GL, Sponchiado J, Cerezer F, Barros MAS, de Souza AQS, Dos Santos CC, Giné GAF, Kerches-Rogeri P, Weber MM, Ambar G, Cabrera-Martinez LV, Eriksson A, Silveira M, Santos CF, Alves L, Barbier E, Rezende GC, Garbino GST, Rios ÉO, Silva A, Nascimento ATA, de Carvalho RS, Feijó A, Arrabal J, Agostini I, Lamattina D, Costa S, Vanderhoeven E, de Melo FR, de Oliveira Laroque P, Jerusalinsky L, Valença-Montenegro MM, Martins AB, Ludwig G, de Azevedo RB, Anzóategui A, da Silva MX, Figuerêdo Duarte Moraes M, Vogliotti A, Gatti A, Püttker T, Barros CS, Martins TK, Keuroghlian A, Eaton DP, Neves CL, Nardi MS, Braga C, Gonçalves PR, Srbek-Araujo AC, Mendes P, de Oliveira JA, Soares FAM, Rocha PA, Crawshaw P, Ribeiro MC, Galetti M., Ecology. February 1, 2018; 99 (2): 498.
	A disassembly-driven mechanism explains F-actin-mediated chromosome transport in starfish oocytes., Bun P, Dmitrieff S, Belmonte JM, Nédélec FJ, Lénárt P., Elife. January 19, 2018; 7
	Primates in peril: the significance of Brazil, Madagascar, Indonesia and the Democratic Republic of the Congo for global primate conservation., Estrada A, Garber PA, Mittermeier RA, Wich S, Gouveia S, Dobrovolski R, Nekaris KAI, Nijman V, Rylands AB, Maisels F, Williamson EA, Bicca-Marques J, Fuentes A, Jerusalinsky L, Johnson S, Rodrigues de Melo F, Oliveira L, Schwitzer C, Roos C, Cheyne SM, Martins Kierulff MC, Raharivololona B, Talebi M, Ratsimbazafy J, Supriatna J, Boonratana R, Wedana M, Setiawan A., PeerJ. January 1, 2018; 6 e4869.
	Regulatory mechanisms of sperm flagellar motility by metachronal and synchronous sliding of doublet microtubules., Takei GL, Fujinoki M, Yoshida K, Ishijima S., Mol Hum Reprod. December 1, 2017; 23 (12): 817-826.
	Architectures of soft robotic locomotion enabled by simple mechanical principles., Zhu L, Cao Y, Liu Y, Yang Z, Chen X., Soft Matter. June 28, 2017; 13 (25): 4441-4456.
	The crown-of-thorns starfish genome as a guide for biocontrol of this coral reef pest., Hall MR, Kocot KM, Baughman KW, Fernandez-Valverde SL, Gauthier MEA, Hatleberg WL, Krishnan A, McDougall C, Motti CA, Shoguchi E, Wang T, Xiang X, Zhao M, Bose U, Shinzato C, Hisata K, Fujie M, Kanda M, Cummins SF, Satoh N, Degnan SM, Degnan BM., Nature. April 5, 2017; 544 (7649): 231-234.
	Immanent conditions determine imminent collapses: nutrient regimes define the resilience of macroalgal communities., Boada J, Arthur R, Alonso D, Pagès JF, Pessarrodona A, Oliva S, Ceccherelli G, Piazzi L, Romero J, Alcoverro T., Proc Biol Sci. March 29, 2017; 284 (1851):
	The SpTransformer Gene Family (Formerly Sp185/333) in the Purple Sea Urchin and the Functional Diversity of the Anti-Pathogen rSpTransformer-E1 Protein., Smith LC, Lun CM., Front Immunol. March 13, 2017; 8 725.
	An Organismal Model for Gene Regulatory Networks in the Gut-Associated Immune Response., Buckley KM, Rast JP., Front Immunol. March 13, 2017; 8 1297.
	Infomap Bioregions: Interactive Mapping of Biogeographical Regions from Species Distributions., Edler D, Guedes T, Zizka A, Rosvall M, Antonelli A., Syst Biol. March 1, 2017; 66 (2): 197-204.
	Genomic Characterization of the Evolutionary Potential of the Sea Urchin Strongylocentrotus droebachiensis Facing Ocean Acidification., Runcie DE, Dorey N, Garfield DA, Stumpp M, Dupont S, Wray GA., Genome Biol Evol. December 1, 2016; 8 (12): 3672-3684.
	Genome evolution in the allotetraploid frog Xenopus laevis., Session AM, Uno Y, Kwon T, Chapman JA, Toyoda A, Takahashi S, Fukui A, Hikosaka A, Suzuki A, Kondo M, van Heeringen SJ, Quigley I, Heinz S, Ogino H, Ochi H, Hellsten U, Lyons JB, Simakov O, Putnam N, Stites J, Kuroki Y, Tanaka T, Michiue T, Watanabe M, Bogdanovic O, Lister R, Georgiou G, Paranjpe SS, van Kruijsbergen I, Shu S, Carlson J, Kinoshita T, Ohta Y, Mawaribuchi S, Jenkins J, Grimwood J, Schmutz J, Mitros T, Mozaffari SV, Suzuki Y, Haramoto Y, Yamamoto TS, Takagi C, Heald R, Miller K, Haudenschild C, Kitzman J, Nakayama T, Izutsu Y, Robert J, Fortriede J, Burns K, Lotay V, Karimi K, Yasuoka Y, Dichmann DS, Flajnik MF, Houston DW, Shendure J, DuPasquier L, Vize PD, Zorn AM, Ito M, Marcotte EM, Wallingford JB, Ito Y, Asashima M, Ueno N, Matsuda Y, Veenstra GJ, Fujiyama A, Harland RM, Taira M, Rokhsar DS., Nature. October 20, 2016; 538 (7625): 336-343.
	Method to extract minimally damaged collagen fibrils from tendon., Liu Y, Andarawis-Puri N, Eppell SJ., J Biol Methods. September 16, 2016; 3 (4): e54.
	Mother centrioles are kicked out so that starfish zygote can grow., Verlhac MH., J Cell Biol. March 28, 2016; 212 (7): 759-61.
	A workflow to process 3D+time microscopy images of developing organisms and reconstruct their cell lineage., Faure E, Savy T, Rizzi B, Melani C, Stašová O, Fabrèges D, Špir R, Hammons M, Čúnderlík R, Recher G, Lombardot B, Duloquin L, Colin I, Kollár J, Desnoulez S, Affaticati P, Maury B, Boyreau A, Nief JY, Calvat P, Vernier P, Frain M, Lutfalla G, Kergosien Y, Suret P, Remešíková M, Doursat R, Sarti A, Mikula K, Peyriéras N, Bourgine P., Nat Commun. February 25, 2016; 7 8674.
	Assessing Different Causes of Crown-of-Thorns Starfish Outbreaks and Appropriate Responses for Management on the Great Barrier Reef., Babcock RC, Dambacher JM, Morello EB, Plagányi ÉE, Hayes KR, Sweatman HP, Pratchett MS., PLoS One. January 1, 2016; 11 (12): e0169048.
	An Exon-Capture System for the Entire Class Ophiuroidea., Hugall AF, O'Hara TD, Hunjan S, Nilsen R, Moussalli A., Mol Biol Evol. January 1, 2016; 33 (1): 281-94.
	Phylotranscriptomic analysis uncovers a wealth of tissue inhibitor of metalloproteinases variants in echinoderms., Clouse RM, Linchangco GV, Kerr AM, Reid RW, Janies DA., R Soc Open Sci. December 4, 2015; 2 (12): 150377.
	De Novo Assembly and Characterization of the Invasive Northern Pacific Seastar Transcriptome., Richardson MF, Sherman CD., PLoS One. November 3, 2015; 10 (11): e0142003.
	Evolutionary Analysis and Classification of OATs, OCTs, OCTNs, and Other SLC22 Transporters: Structure-Function Implications and Analysis of Sequence Motifs., Zhu C, Nigam KB, Date RC, Bush KT, Springer SA, Saier MH, Wu W, Nigam SK., PLoS One. November 3, 2015; 10 (11): e0140569.
	Large area sub-micron chemical imaging of magnesium in sea urchin teeth., Masic A, Weaver JC., J Struct Biol. March 1, 2015; 189 (3): 269-75.
	The test skeletal matrix of the black sea urchin Arbacia lixula., Kanold JM, Immel F, Broussard C, Guichard N, Plasseraud L, Corneillat M, Alcaraz G, Brümmer F, Marin F., Comp Biochem Physiol Part D Genomics Proteomics. March 1, 2015; 13 24-34.
	Asteroids, ophiuroids and holothurians from the southeastern Weddell Sea (Southern Ocean)., Gutt J, Piepenburg D, Voß J., Zookeys. August 14, 2014; (434): 1-15.
	Phylogenomic analysis of echinoderm class relationships supports Asterozoa., Telford MJ, Lowe CJ, Cameron CB, Ortega-Martinez O, Aronowicz J, Oliveri P, Copley RR., Proc Biol Sci. July 7, 2014; 281 (1786):
	Biomineralization of Schlumbergerella floresiana, a significant carbonate-producing benthic foraminifer., Sabbatini A, Bédouet L, Marie A, Bartolini A, Landemarre L, Weber MX, Gusti Ngurah Kade Mahardika I, Berland S, Zito F, Vénec-Peyré MT., Geobiology. July 1, 2014; 12 (4): 289-307.
	The transcriptome of the NZ endemic sea urchin Kina (Evechinus chloroticus)., Gillard GB, Garama DJ, Brown CM., BMC Genomics. January 20, 2014; 15 45.
	Quantitative developmental transcriptomes of the sea urchin Strongylocentrotus purpuratus., Tu Q, Cameron RA, Davidson EH., Dev Biol. January 15, 2014; 385 (2): 160-7.
	PCR survey of 50 introns in animals: cross-amplification of homologous EPIC loci in eight non-bilaterian, protostome and deuterostome phyla., Gérard K, Guilloton E, Arnaud-Haond S, Aurelle D, Bastrop R, Chevaldonné P, Derycke S, Hanel R, Lapègue S, Lejeusne C, Mousset S, Ramšak A, Remerie T, Viard F, Féral JP, Chenuil A., Mar Genomics. December 1, 2013; 12 1-8.
	Towards 3D in silico modeling of the sea urchin embryonic development., Rizzi B, Peyrieras N., J Chem Biol. September 13, 2013; 7 (1): 17-28.
	Probabilistic error correction for RNA sequencing., Le HS, Schulz MH, McCauley BM, Hinman VF, Bar-Joseph Z., Nucleic Acids Res. May 1, 2013; 41 (10): e109.
	Synchrony in dynamics of giant kelp forests is driven by both local recruitment and regional environmental controls., Cavanaugh KC, Kendall BE, Siegel DA, Reed DC, Alberto F, Assis J., Ecology. February 1, 2013; 94 (2): 499-509.
	A simple method for estimating informative node age priors for the fossil calibration of molecular divergence time analyses., Nowak MD, Smith AB, Simpson C, Zwickl DJ., PLoS One. January 1, 2013; 8 (6): e66245.
	Evaluating detection limits of next-generation sequencing for the surveillance and monitoring of international marine pests., Pochon X, Bott NJ, Smith KF, Wood SA., PLoS One. January 1, 2013; 8 (9): e73935.
	Graph rigidity reveals well-constrained regions of chromosome conformation embeddings., Duggal G, Kingsford C., BMC Bioinformatics. September 21, 2012; 13 241.
	Transcriptome sequencing and characterization for the sea cucumber Apostichopus japonicus (Selenka, 1867)., Du H, Bao Z, Hou R, Wang S, Su H, Yan J, Tian M, Li Y, Wei W, Lu W, Hu X, Wang S, Hu J., PLoS One. January 1, 2012; 7 (3): e33311.

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