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Ancestral regulatory circuits governing ectoderm patterning downstream of Nodal and BMP2/4 revealed by gene regulatory network analysis in an echinoderm. , Saudemont A, Haillot E, Mekpoh F, Bessodes N, Quirin M, Lapraz F, Duboc V, Röttinger E, Range R , Oisel A, Besnardeau L, Wincker P, Lepage T ., PLoS Genet. December 23, 2010; 6 (12): e1001259.
Monte Carlo analysis of an ODE Model of the Sea Urchin Endomesoderm Network. , Kühn C, Wierling C, Kühn A, Klipp E, Panopoulou G, Lehrach H, Poustka AJ., BMC Syst Biol. August 23, 2009; 3 83.
Sequential logic model deciphers dynamic transcriptional control of gene expressions. , Yeo ZX, Wong ST, Arjunan SN, Piras V, Tomita M, Selvarajoo K, Giuliani A, Tsuchiya M., PLoS One. August 22, 2007; 2 (8): e776.
Real-time monitoring of functional interactions between upstream and core promoter sequences in living cells of sea urchin embryos. , Kobayashi A, Watanabe Y, Akasaka K , Kokubo T., Nucleic Acids Res. January 1, 2007; 35 (14): 4882-94.
Patchy interspecific sequence similarities efficiently identify positive cis-regulatory elements in the sea urchin. , Yuh CH, Brown CT, Livi CB, Rowen L, Clarke PJ, Davidson EH ., Dev Biol. June 1, 2002; 246 (1): 148-61.
A regulatory gene network that directs micromere specification in the sea urchin embryo. , Oliveri P , Carrick DM, Davidson EH ., Dev Biol. June 1, 2002; 246 (1): 209-28.
Function and evolution of Otx proteins. , Klein WH , Li X., Biochem Biophys Res Commun. May 10, 1999; 258 (2): 229-33.