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Coup-TF: A maternal factor essential for differentiation along the embryonic axes in the sea urchin Paracentrotus lividus. , Tsironis I, Paganos P , Gouvi G, Tsimpos P, Stamopoulou A, Arnone MI , Flytzanis CN., Dev Biol. July 1, 2021; 475 131-144.
Early asymmetric cues triggering the dorsal/ventral gene regulatory network of the sea urchin embryo. , Cavalieri V, Spinelli G ., Elife. December 2, 2014; 3 e04664.
Molecular conservation of metazoan gut formation: evidence from expression of endomesoderm genes in Capitella teleta (Annelida). , Boyle MJ, Yamaguchi E, Seaver EC., Evodevo. June 17, 2014; 5 39.
How Hox genes can shed light on the place of echinoderms among the deuterostomes. , David B, Mooi R., Evodevo. June 17, 2014; 5 22.
The Compass-like locus, exclusive to the Ambulacrarians, encodes a chromatin insulator binding protein in the sea urchin embryo. , Cavalieri V, Melfi R, Spinelli G ., PLoS Genet. January 1, 2013; 9 (9): e1003847.
Gene expression analysis of Six3, Pax6, and Otx in the early development of the stalked crinoid Metacrinus rotundus. , Omori A, Akasaka K , Kurokawa D, Amemiya S ., Gene Expr Patterns. January 1, 2011; 11 (1-2): 48-56.
Ancestral regulatory circuits governing ectoderm patterning downstream of Nodal and BMP2/4 revealed by gene regulatory network analysis in an echinoderm. , Saudemont A, Haillot E, Mekpoh F, Bessodes N, Quirin M, Lapraz F, Duboc V, Röttinger E, Range R , Oisel A, Besnardeau L, Wincker P, Lepage T ., PLoS Genet. December 23, 2010; 6 (12): e1001259.
Characterization and expression of a sea star otx ortholog (Protxβ1/2) in the larva of Patiriella regularis. , Elia L, Cisternas P, Byrne M ., Gene Expr Patterns. January 1, 2010; 10 (7-8): 323-7.
Monte Carlo analysis of an ODE Model of the Sea Urchin Endomesoderm Network. , Kühn C, Wierling C, Kühn A, Klipp E, Panopoulou G, Lehrach H, Poustka AJ., BMC Syst Biol. August 23, 2009; 3 83.
cis-Regulatory sequences driving the expression of the Hbox12 homeobox-containing gene in the presumptive aboral ectoderm territory of the Paracentrotus lividus sea urchin embryo. , Cavalieri V, Di Bernardo M, Anello L, Spinelli G ., Dev Biol. September 15, 2008; 321 (2): 455-69.
A spatially dynamic cohort of regulatory genes in the endomesodermal gene network of the sea urchin embryo. , Smith J, Kraemer E, Liu H, Theodoris C, Davidson E ., Dev Biol. January 15, 2008; 313 (2): 863-75.
Caught in the evolutionary act: precise cis-regulatory basis of difference in the organization of gene networks of sea stars and sea urchins. , Hinman VF , Nguyen A, Davidson EH ., Dev Biol. December 15, 2007; 312 (2): 584-95.
DNA variations within the sea urchin Otx gene enhancer. , Yamamoto T , Kawamoto R, Fujii T, Sakamoto N , Shibata T., FEBS Lett. November 13, 2007; 581 (27): 5234-40.
A gene regulatory network subcircuit drives a dynamic pattern of gene expression. , Smith J, Theodoris C, Davidson EH ., Science. November 2, 2007; 318 (5851): 794-7.
Sequential logic model deciphers dynamic transcriptional control of gene expressions. , Yeo ZX, Wong ST, Arjunan SN, Piras V, Tomita M, Selvarajoo K, Giuliani A, Tsuchiya M., PLoS One. August 22, 2007; 2 (8): e776.
Regulation of spblimp1/ krox1a, an alternatively transcribed isoform expressed in midgut and hindgut of the sea urchin gastrula. , Livi CB, Davidson EH ., Gene Expr Patterns. January 1, 2007; 7 (1-2): 1-7.
Real-time monitoring of functional interactions between upstream and core promoter sequences in living cells of sea urchin embryos. , Kobayashi A, Watanabe Y, Akasaka K , Kokubo T., Nucleic Acids Res. January 1, 2007; 35 (14): 4882-94.
Repression of mesodermal fate by foxa, a key endoderm regulator of the sea urchin embryo. , Oliveri P , Walton KD, Davidson EH , McClay DR ., Development. November 1, 2006; 133 (21): 4173-81.
Involvement of two Hox genes and Otx in echinoderm body-plan morphogenesis in the sea urchin Holopneustes purpurescens. , Morris VB, Byrne M ., J Exp Zool B Mol Dev Evol. September 15, 2005; 304 (5): 456-67.
Strongylocentrotus purpuratus transcription factor GATA-E binds to and represses transcription at an Otx-Goosecoid cis-regulatory element within the aboral ectoderm-specific spec2a enhancer. , Kiyama T, Zhang N, Dayal S, Yun Lee P, Liang S, Villinski JT, Klein WH ., Dev Biol. April 15, 2005; 280 (2): 436-47.
A genetic regulatory network for Xenopus mesendoderm formation. , Loose M, Patient R., Dev Biol. July 15, 2004; 271 (2): 467-78.
An otx cis-regulatory module: a key node in the sea urchin endomesoderm gene regulatory network. , Yuh CH, Dorman ER, Howard ML, Davidson EH ., Dev Biol. May 15, 2004; 269 (2): 536-51.
Expression of an Otx gene in the adult rudiment and the developing central nervous system in the vestibula larva of the sea urchin Holopneustes purpurescens. , Morris VB, Zhao JT, Shearman DC, Byrne M , Frommer M., Int J Dev Biol. February 1, 2004; 48 (1): 17-22.
The Otx binding site is required for the activation of HpOtxL mRNA expression in the sea urchin, Hemicentrotus pulcherrimus. , Hayashibara Y, Mitsunaga-Nakatsubo K, Sakamoto N , Shimotori T, Akasaka K , Yamamoto T ., Dev Growth Differ. February 1, 2004; 46 (1): 61-7.
Expression and function of a starfish Otx ortholog, AmOtx: a conserved role for Otx proteins in endoderm development that predates divergence of the eleutherozoa. , Hinman VF , Nguyen AT, Davidson EH ., Mech Dev. October 1, 2003; 120 (10): 1165-76.
Evolutionary convergence in Otx expression in the pentameral adult rudiment in direct-developing sea urchins. , Nielsen MG, Popodi E, Minsuk S, Raff RA., Dev Genes Evol. March 1, 2003; 213 (2): 73-82.
Functional interaction between TATA and upstream CACGTG elements regulates the temporally specific expression of Otx mRNAs during early embryogenesis of the sea urchin, Hemicentrotus pulcherrimus. , Kobayashi A, Akasaka K , Kawaichi M, Kokubo T., Nucleic Acids Res. July 15, 2002; 30 (14): 3034-44.
Patchy interspecific sequence similarities efficiently identify positive cis-regulatory elements in the sea urchin. , Yuh CH, Brown CT, Livi CB, Rowen L, Clarke PJ, Davidson EH ., Dev Biol. June 1, 2002; 246 (1): 148-61.
A regulatory gene network that directs micromere specification in the sea urchin embryo. , Oliveri P , Carrick DM, Davidson EH ., Dev Biol. June 1, 2002; 246 (1): 209-28.
Gene expression and larval evolution: changing roles of distal-less and orthodenticle in echinoderm larvae. , Lowe CJ , Issel-Tarver L, Wray GA ., Evol Dev. January 1, 2002; 4 (2): 111-23.
Correct Expression of spec2a in the sea urchin embryo requires both Otx and other cis-regulatory elements. , Yuh CH, Li X, Davidson EH , Klein WH ., Dev Biol. April 15, 2001; 232 (2): 424-38.
CAAT sites are required for the activation of the H. pulcherrimus Ars gene by Otx. , Kiyama T, Sasai K, Takata K, Mitsunaga-Nakatsubo K, Shimada H, Akasaka K ., Dev Genes Evol. December 1, 2000; 210 (12): 583-90.
Expression of the otx gene in the ciliary bands during sea cucumber embryogenesis. , Shoguchi E, Harada Y, Numakunai T, Satoh N ., Genesis. June 1, 2000; 27 (2): 58-63.
Function and evolution of Otx proteins. , Klein WH , Li X., Biochem Biophys Res Commun. May 10, 1999; 258 (2): 229-33.
Differential expression of sea urchin Otx isoform (hpOtxE and HpOtxL) mRNAs during early development. , Mitsunaga-Nakatsubo K, Akasaka K , Sakamoto N , Takata K, Matsumura Y, Kitajima T, Kusunoki S, Shimada H., Int J Dev Biol. July 1, 1998; 42 (5): 645-51.
Two Otx proteins generated from multiple transcripts of a single gene in Strongylocentrotus purpuratus. , Li X, Chuang CK, Mao CA, Angerer LM , Klein WH ., Dev Biol. July 15, 1997; 187 (2): 253-66.
Two isoforms of orthodenticle-related proteins (HpOtx) bind to the enhancer element of sea urchin arylsulfatase gene. , Sakamoto N , Akasaka K , Mitsunaga-Nakatsubo K, Takata K, Nishitani T, Shimada H., Dev Biol. January 15, 1997; 181 (2): 284-95.
Transient appearance of Strongylocentrotus purpuratus Otx in micromere nuclei: cytoplasmic retention of SpOtx possibly mediated through an alpha- actinin interaction. , Chuang CK, Wikramanayake AH , Mao CA, Li X, Klein WH ., Dev Genet. January 1, 1996; 19 (3): 231-7.
Characterization of the SpHE promoter that is spatially regulated along the animal-vegetal axis of the sea urchin embryo. , Wei Z, Angerer LM , Gagnon ML, Angerer RC ., Dev Biol. September 1, 1995; 171 (1): 195-211.
Multiple Otx binding sites required for expression of the Strongylocentrotus purpuratus Spec2a gene. , Mao CA, Gan L, Klein WH ., Dev Biol. September 1, 1994; 165 (1): 229-42.