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Coup-TF: A maternal factor essential for differentiation along the embryonic axes in the sea urchin Paracentrotus lividus. , Tsironis I, Paganos P , Gouvi G, Tsimpos P, Stamopoulou A, Arnone MI , Flytzanis CN., Dev Biol. July 1, 2021; 475 131-144.
The evolution of a new cell type was associated with competition for a signaling ligand. , Ettensohn CA , Adomako-Ankomah A., PLoS Biol. September 18, 2019; 17 (9): e3000460.
Global analysis of primary mesenchyme cell cis-regulatory modules by chromatin accessibility profiling. , Shashikant T, Khor JM, Ettensohn CA ., BMC Genomics. March 20, 2018; 19 (1): 206.
Genome-wide use of high- and low-affinity Tbrain transcription factor binding sites during echinoderm development. , Cary GA , Cheatle Jarvela AM, Francolini RD, Hinman VF ., Proc Natl Acad Sci U S A. June 6, 2017; 114 (23): 5854-5861.
Large-scale gene expression study in the ophiuroid Amphiura filiformis provides insights into evolution of gene regulatory networks. , Dylus DV , Czarkwiani A, Stångberg J, Ortega-Martinez O, Dupont S, Oliveri P ., Evodevo. January 1, 2016; 7 2.
Modular evolution of DNA-binding preference of a Tbrain transcription factor provides a mechanism for modifying gene regulatory networks. , Cheatle Jarvela AM, Brubaker L, Vedenko A, Gupta A, Armitage BA, Bulyk ML, Hinman VF ., Mol Biol Evol. October 1, 2014; 31 (10): 2672-88.
Larval mesenchyme cell specification in the primitive echinoid occurs independently of the double-negative gate. , Yamazaki A, Kidachi Y, Yamaguchi M, Minokawa T ., Development. July 1, 2014; 141 (13): 2669-79.
Sub-circuits of a gene regulatory network control a developmental epithelial-mesenchymal transition. , Saunders LR, McClay DR ., Development. April 1, 2014; 141 (7): 1503-13.
Expression of skeletogenic genes during arm regeneration in the brittle star Amphiura filiformis. , Czarkwiani A, Dylus DV , Oliveri P ., Gene Expr Patterns. December 1, 2013; 13 (8): 464-72.
Development of an embryonic skeletogenic mesenchyme lineage in a sea cucumber reveals the trajectory of change for the evolution of novel structures in echinoderms. , McCauley BS, Wright EP, Exner C, Kitazawa C, Hinman VF ., Evodevo. August 9, 2012; 3 (1): 17.
Heterochronic activation of VEGF signaling and the evolution of the skeleton in echinoderm pluteus larvae. , Morino Y, Koga H , Tachibana K, Shoguchi E, Kiyomoto M , Wada H., Evol Dev. January 1, 2012; 14 (5): 428-36.
The control of foxN2/3 expression in sea urchin embryos and its function in the skeletogenic gene regulatory network. , Rho HK, McClay DR ., Development. March 1, 2011; 138 (5): 937-45.
Uncoupling of complex regulatory patterning during evolution of larval development in echinoderms. , Yankura KA, Martik ML, Jennings CK, Hinman VF ., BMC Biol. November 30, 2010; 8 143.
A conserved gene regulatory network subcircuit drives different developmental fates in the vegetal pole of highly divergent echinoderm embryos. , McCauley BS, Weideman EP, Hinman VF ., Dev Biol. April 15, 2010; 340 (2): 200-8.
Evolutionary modification of T-brain ( tbr) expression patterns in sand dollar. , Minemura K, Yamaguchi M, Minokawa T ., Gene Expr Patterns. October 1, 2009; 9 (7): 468-74.
Monte Carlo analysis of an ODE Model of the Sea Urchin Endomesoderm Network. , Kühn C, Wierling C, Kühn A, Klipp E, Panopoulou G, Lehrach H, Poustka AJ., BMC Syst Biol. August 23, 2009; 3 83.
Structure-function correlation of micro1 for micromere specification in sea urchin embryos. , Yamazaki A, Ki S, Kokubo T, Yamaguchi M., Mech Dev. January 1, 2009; 126 (8-9): 611-23.
A new method, using cis-regulatory control, for blocking embryonic gene expression. , Smith J, Davidson EH ., Dev Biol. June 15, 2008; 318 (2): 360-5.
ske-T, a T-box gene expressed in the skeletogenic mesenchyme lineage of the sea urchin embryo. , Croce J , Lhomond G, Lozano JC, Gache C., Mech Dev. September 1, 2001; 107 (1-2): 159-62.
A Sea Cucumber Homolog of the Mouse T-Brain-1 is Expressed in the Invaginated Cells of the Early Gastrula in Holothuria leucospilota. , Maruyama YK., Zoolog Sci. April 1, 2000; 17 (3): 383-7.