Pedro Martinez - Publications

Publications (23)

ECB-PERS-4394

Publications By Pedro Martinez

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Regeneration of starfish radial nerve cord restores animal mobility and unveils a new coelomocyte population., Magalhães F, Andrade C, Simões B, Brigham F, Valente R, Martinez P, Rino J, Sugni M, Coelho AV., Cell Tissue Res. November 1, 2023; 394 (2): 293-308.
Integrating single cell transcriptomics and volume electron microscopy confirms the presence of pancreatic acinar-like cells in sea urchins., Paganos P, Ronchi P, Carl J, Mizzon G, Martinez P, Benvenuto G, Arnone MI., Front Cell Dev Biol. September 15, 2022; 10 991664.
Studying Echinodermata Arm Explant Regeneration Using Echinaster sepositus., Ferrario C, Ben Khadra Y, Sugni M, Candia Carnevali MD, Martinez P, Bonasoro F., Methods Mol Biol. January 1, 2022; 2450 263-291.
Characterization of Coelomic Fluid Cell Types in the Starfish Marthasterias glacialis Using a Flow Cytometry/Imaging Combined Approach., Andrade C, Oliveira B, Guatelli S, Martinez P, Simões B, Bispo C, Ferrario C, Bonasoro F, Rino J, Sugni M, Gardner R, Zilhão R, Coelho AV., Front Immunol. January 1, 2021; 12 641664.
Mitigating Anticipated Effects of Systematic Errors Supports Sister-Group Relationship between Xenacoelomorpha and Ambulacraria., Philippe H, Poustka AJ, Chiodin M, Hoff KJ, Dessimoz C, Tomiczek B, Schiffer PH, Müller S, Domman D, Horn M, Kuhl H, Timmermann B, Satoh N, Hikosaka-Katayama T, Nakano H, Rowe ML, Elphick MR, Thomas-Chollier M, Hankeln T, Mertes F, Wallberg A, Rast JP, Copley RR, Martinez P, Telford MJ., Curr Biol. June 3, 2019; 29 (11): 1818-1826.e6.
Fundamental aspects of arm repair phase in two echinoderm models., Ferrario C, Ben Khadra Y, Czarkwiani A, Zakrzewski A, Martinez P, Colombo G, Bonasoro F, Candia Carnevali MD, Oliveri P, Sugni M., Dev Biol. January 15, 2018; 433 (2): 297-309.
An integrated view of asteroid regeneration: tissues, cells and molecules., Ben Khadra Y, Sugni M, Ferrario C, Bonasoro F, Varela Coelho A, Martinez P, Candia Carnevali MD., Cell Tissue Res. October 1, 2017; 370 (1): 13-28.
Regulatory circuit rewiring and functional divergence of the duplicate admp genes in dorsoventral axial patterning., Chang YC, Pai CY, Chen YC, Ting HC, Martinez P, Telford MJ, Yu JK, Su YH., Dev Biol. February 1, 2016; 410 (1): 108-18.
Evolution of a pentameral body plan was not linked to translocation of anterior Hox genes: the echinoderm HOX cluster revisited., Byrne M, Martinez P, Morris V., Evol Dev. January 1, 2016; 18 (2): 137-43.
The coelomic epithelium transcriptome from a clonal sea star, Coscinasterias muricata., Gabre JL, Martinez P, Nilsson Sköld H, Ortega-Martinez O, Abril JF., Mar Genomics. December 1, 2015; 24 Pt 3 245-8.
Homeobox genes expressed during echinoderm arm regeneration., Ben Khadra Y, Said K, Thorndyke M, Martinez P., Biochem Genet. April 1, 2014; 52 (3-4): 166-80.
Pattern and process during sea urchin gut morphogenesis: the regulatory landscape., Annunziata R, Perillo M, Andrikou C, Cole AG, Martinez P, Arnone MI., Genesis. March 1, 2014; 52 (3): 251-68.
Intact cluster and chordate-like expression of ParaHox genes in a sea star., Annunziata R, Martinez P, Arnone MI., BMC Biol. June 27, 2013; 11 68.
Two ParaHox genes, SpLox and SpCdx, interact to partition the posterior endoderm in the formation of a functional gut., Cole AG, Rizzo F, Martinez P, Fernandez-Serra M, Arnone MI., Development. February 1, 2009; 136 (4): 541-9.
The genome of the sea urchin Strongylocentrotus purpuratus., Sea Urchin Genome Sequencing Consortium, Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, Foltz KR, Hamdoun A, Hynes RO, Klein WH, Marzluff W, McClay DR, Morris RL, Mushegian A, Rast JP, Smith LC, Thorndyke MC, Vacquier VD, Wessel GM, Wray G, Zhang L, Elsik CG, Ermolaeva O, Hlavina W, Hofmann G, Kitts P, Landrum MJ, Mackey AJ, Maglott D, Panopoulou G, Poustka AJ, Pruitt K, Sapojnikov V, Song X, Souvorov A, Solovyev V, Wei Z, Whittaker CA, Worley K, Durbin KJ, Shen Y, Fedrigo O, Garfield D, Haygood R, Primus A, Satija R, Severson T, Gonzalez-Garay ML, Jackson AR, Milosavljevic A, Tong M, Killian CE, Livingston BT, Wilt FH, Adams N, Bellé R, Carbonneau S, Cheung R, Cormier P, Cosson B, Croce J, Fernandez-Guerra A, Genevière AM, Goel M, Kelkar H, Morales J, Mulner-Lorillon O, Robertson AJ, Goldstone JV, Cole B, Epel D, Gold B, Hahn ME, Howard-Ashby M, Scally M, Stegeman JJ, Allgood EL, Cool J, Judkins KM, McCafferty SS, Musante AM, Obar RA, Rawson AP, Rossetti BJ, Gibbons IR, Hoffman MP, Leone A, Istrail S, Materna SC, Samanta MP, Stolc V, Tongprasit W, Tu Q, Bergeron KF, Brandhorst BP, Whittle J, Berney K, Bottjer DJ, Calestani C, Peterson K, Chow E, Yuan QA, Elhaik E, Graur D, Reese JT, Bosdet I, Heesun S, Marra MA, Schein J, Anderson MK, Brockton V, Buckley KM, Cohen AH, Fugmann SD, Hibino T, Loza-Coll M, Majeske AJ, Messier C, Nair SV, Pancer Z, Terwilliger DP, Agca C, Arboleda E, Chen N, Churcher AM, Hallböök F, Humphrey GW, Idris MM, Kiyama T, Liang S, Mellott D, Mu X, Murray G, Olinski RP, Raible F, Rowe M, Taylor JS, Tessmar-Raible K, Wang D, Wilson KH, Yaguchi S, Gaasterland T, Galindo BE, Gunaratne HJ, Juliano C, Kinukawa M, Moy GW, Neill AT, Nomura M, Raisch M, Reade A, Roux MM, Song JL, Su YH, Townley IK, Voronina E, Wong JL, Amore G, Branno M, Brown ER, Cavalieri V, Duboc V, Duloquin L, Flytzanis C, Gache C, Lapraz F, Lepage T, Locascio A, Martinez P, Matassi G, Matranga V, Range R, Rizzo F, Röttinger E, Beane W, Bradham C, Byrum C, Glenn T, Hussain S, Manning G, Miranda E, Thomason R, Walton K, Wikramanayke A, Wu SY, Xu R, Brown CT, Chen L, Gray RF, Lee PY, Nam J, Oliveri P, Smith J, Muzny D, Bell S, Chacko J, Cree A, Curry S, Davis C, Dinh H, Dugan-Rocha S, Fowler J, Gill R, Hamilton C, Hernandez J, Hines S, Hume J, Jackson L, Jolivet A, Kovar C, Lee S, Lewis L, Miner G, Morgan M, Nazareth LV, Okwuonu G, Parker D, Pu LL, Thorn R, Wright R., Science. November 10, 2006; 314 (5801): 941-52.
Unusual gene order and organization of the sea urchin hox cluster., Cameron RA, Rowen L, Nesbitt R, Bloom S, Rast JP, Berney K, Arenas-Mena C, Martinez P, Lucas S, Richardson PM, Davidson EH, Peterson KJ, Hood L., J Exp Zool B Mol Dev Evol. January 15, 2006; 306 (1): 45-58.
Evolution of echinoderms may not have required modification of the ancestral deuterostome HOX gene cluster: first report of PG4 and PG5 Hox orthologues in echinoderms., Long S, Martinez P, Chen WC, Thorndyke M, Byrne M., Dev Genes Evol. November 1, 2003; 213 (11): 573-6.
A sea urchin genome project: sequence scan, virtual map, and additional resources., Cameron RA, Mahairas G, Rast JP, Martinez P, Biondi TR, Swartzell S, Wallace JC, Poustka AJ, Livingston BT, Wray GA, Ettensohn CA, Lehrach H, Britten RJ, Davidson EH, Hood L., Proc Natl Acad Sci U S A. August 15, 2000; 97 (17): 9514-8.
Organization of an echinoderm Hox gene cluster., Martinez P, Rast JP, Arenas-Mena C, Davidson EH., Proc Natl Acad Sci U S A. February 16, 1999; 96 (4): 1469-74.
Expression of the Hox gene complex in the indirect development of a sea urchin., Arenas-Mena C, Martinez P, Cameron RA, Davidson EH., Proc Natl Acad Sci U S A. October 27, 1998; 95 (22): 13062-7.
Complete sequence of SpHox8 and its linkage in the single Hox gene cluster of Strongylocentrotus purpuratus., Martinez P, Lee JC, Davidson EH., J Mol Evol. April 1, 1997; 44 (4): 371-7.
SpHmx, a sea urchin homeobox gene expressed in embryonic pigment cells., Martinez P, Davidson EH., Dev Biol. January 15, 1997; 181 (2): 213-22.
Complexity and organization of DNA-protein interactions in the 5''-regulatory region of an endoderm-specific marker gene in the sea urchin embryo., Yuh CH, Ransick A, Martinez P, Britten RJ, Davidson EH., Mech Dev. August 1, 1994; 47 (2): 165-86.

Regeneration of starfish radial nerve cord restores animal mobility and unveils a new coelomocyte population., Magalhães F, Andrade C, Simões B, Brigham F, Valente R, Martinez P, Rino J, Sugni M, Coelho AV., Cell Tissue Res. November 1, 2023; 394 (2): 293-308.

Integrating single cell transcriptomics and volume electron microscopy confirms the presence of pancreatic acinar-like cells in sea urchins., Paganos P, Ronchi P, Carl J, Mizzon G, Martinez P, Benvenuto G, Arnone MI., Front Cell Dev Biol. September 15, 2022; 10 991664.

Studying Echinodermata Arm Explant Regeneration Using Echinaster sepositus., Ferrario C, Ben Khadra Y, Sugni M, Candia Carnevali MD, Martinez P, Bonasoro F., Methods Mol Biol. January 1, 2022; 2450 263-291.

Characterization of Coelomic Fluid Cell Types in the Starfish Marthasterias glacialis Using a Flow Cytometry/Imaging Combined Approach., Andrade C, Oliveira B, Guatelli S, Martinez P, Simões B, Bispo C, Ferrario C, Bonasoro F, Rino J, Sugni M, Gardner R, Zilhão R, Coelho AV., Front Immunol. January 1, 2021; 12 641664.

Mitigating Anticipated Effects of Systematic Errors Supports Sister-Group Relationship between Xenacoelomorpha and Ambulacraria., Philippe H, Poustka AJ, Chiodin M, Hoff KJ, Dessimoz C, Tomiczek B, Schiffer PH, Müller S, Domman D, Horn M, Kuhl H, Timmermann B, Satoh N, Hikosaka-Katayama T, Nakano H, Rowe ML, Elphick MR, Thomas-Chollier M, Hankeln T, Mertes F, Wallberg A, Rast JP, Copley RR, Martinez P, Telford MJ., Curr Biol. June 3, 2019; 29 (11): 1818-1826.e6.

Fundamental aspects of arm repair phase in two echinoderm models., Ferrario C, Ben Khadra Y, Czarkwiani A, Zakrzewski A, Martinez P, Colombo G, Bonasoro F, Candia Carnevali MD, Oliveri P, Sugni M., Dev Biol. January 15, 2018; 433 (2): 297-309.

An integrated view of asteroid regeneration: tissues, cells and molecules., Ben Khadra Y, Sugni M, Ferrario C, Bonasoro F, Varela Coelho A, Martinez P, Candia Carnevali MD., Cell Tissue Res. October 1, 2017; 370 (1): 13-28.

Regulatory circuit rewiring and functional divergence of the duplicate admp genes in dorsoventral axial patterning., Chang YC, Pai CY, Chen YC, Ting HC, Martinez P, Telford MJ, Yu JK, Su YH., Dev Biol. February 1, 2016; 410 (1): 108-18.

Evolution of a pentameral body plan was not linked to translocation of anterior Hox genes: the echinoderm HOX cluster revisited., Byrne M, Martinez P, Morris V., Evol Dev. January 1, 2016; 18 (2): 137-43.

The coelomic epithelium transcriptome from a clonal sea star, Coscinasterias muricata., Gabre JL, Martinez P, Nilsson Sköld H, Ortega-Martinez O, Abril JF., Mar Genomics. December 1, 2015; 24 Pt 3 245-8.

Homeobox genes expressed during echinoderm arm regeneration., Ben Khadra Y, Said K, Thorndyke M, Martinez P., Biochem Genet. April 1, 2014; 52 (3-4): 166-80.

Pattern and process during sea urchin gut morphogenesis: the regulatory landscape., Annunziata R, Perillo M, Andrikou C, Cole AG, Martinez P, Arnone MI., Genesis. March 1, 2014; 52 (3): 251-68.

Intact cluster and chordate-like expression of ParaHox genes in a sea star., Annunziata R, Martinez P, Arnone MI., BMC Biol. June 27, 2013; 11 68.

Two ParaHox genes, SpLox and SpCdx, interact to partition the posterior endoderm in the formation of a functional gut., Cole AG, Rizzo F, Martinez P, Fernandez-Serra M, Arnone MI., Development. February 1, 2009; 136 (4): 541-9.

The genome of the sea urchin Strongylocentrotus purpuratus., Sea Urchin Genome Sequencing Consortium, Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, Foltz KR, Hamdoun A, Hynes RO, Klein WH, Marzluff W, McClay DR, Morris RL, Mushegian A, Rast JP, Smith LC, Thorndyke MC, Vacquier VD, Wessel GM, Wray G, Zhang L, Elsik CG, Ermolaeva O, Hlavina W, Hofmann G, Kitts P, Landrum MJ, Mackey AJ, Maglott D, Panopoulou G, Poustka AJ, Pruitt K, Sapojnikov V, Song X, Souvorov A, Solovyev V, Wei Z, Whittaker CA, Worley K, Durbin KJ, Shen Y, Fedrigo O, Garfield D, Haygood R, Primus A, Satija R, Severson T, Gonzalez-Garay ML, Jackson AR, Milosavljevic A, Tong M, Killian CE, Livingston BT, Wilt FH, Adams N, Bellé R, Carbonneau S, Cheung R, Cormier P, Cosson B, Croce J, Fernandez-Guerra A, Genevière AM, Goel M, Kelkar H, Morales J, Mulner-Lorillon O, Robertson AJ, Goldstone JV, Cole B, Epel D, Gold B, Hahn ME, Howard-Ashby M, Scally M, Stegeman JJ, Allgood EL, Cool J, Judkins KM, McCafferty SS, Musante AM, Obar RA, Rawson AP, Rossetti BJ, Gibbons IR, Hoffman MP, Leone A, Istrail S, Materna SC, Samanta MP, Stolc V, Tongprasit W, Tu Q, Bergeron KF, Brandhorst BP, Whittle J, Berney K, Bottjer DJ, Calestani C, Peterson K, Chow E, Yuan QA, Elhaik E, Graur D, Reese JT, Bosdet I, Heesun S, Marra MA, Schein J, Anderson MK, Brockton V, Buckley KM, Cohen AH, Fugmann SD, Hibino T, Loza-Coll M, Majeske AJ, Messier C, Nair SV, Pancer Z, Terwilliger DP, Agca C, Arboleda E, Chen N, Churcher AM, Hallböök F, Humphrey GW, Idris MM, Kiyama T, Liang S, Mellott D, Mu X, Murray G, Olinski RP, Raible F, Rowe M, Taylor JS, Tessmar-Raible K, Wang D, Wilson KH, Yaguchi S, Gaasterland T, Galindo BE, Gunaratne HJ, Juliano C, Kinukawa M, Moy GW, Neill AT, Nomura M, Raisch M, Reade A, Roux MM, Song JL, Su YH, Townley IK, Voronina E, Wong JL, Amore G, Branno M, Brown ER, Cavalieri V, Duboc V, Duloquin L, Flytzanis C, Gache C, Lapraz F, Lepage T, Locascio A, Martinez P, Matassi G, Matranga V, Range R, Rizzo F, Röttinger E, Beane W, Bradham C, Byrum C, Glenn T, Hussain S, Manning G, Miranda E, Thomason R, Walton K, Wikramanayke A, Wu SY, Xu R, Brown CT, Chen L, Gray RF, Lee PY, Nam J, Oliveri P, Smith J, Muzny D, Bell S, Chacko J, Cree A, Curry S, Davis C, Dinh H, Dugan-Rocha S, Fowler J, Gill R, Hamilton C, Hernandez J, Hines S, Hume J, Jackson L, Jolivet A, Kovar C, Lee S, Lewis L, Miner G, Morgan M, Nazareth LV, Okwuonu G, Parker D, Pu LL, Thorn R, Wright R., Science. November 10, 2006; 314 (5801): 941-52.

Unusual gene order and organization of the sea urchin hox cluster., Cameron RA, Rowen L, Nesbitt R, Bloom S, Rast JP, Berney K, Arenas-Mena C, Martinez P, Lucas S, Richardson PM, Davidson EH, Peterson KJ, Hood L., J Exp Zool B Mol Dev Evol. January 15, 2006; 306 (1): 45-58.

Evolution of echinoderms may not have required modification of the ancestral deuterostome HOX gene cluster: first report of PG4 and PG5 Hox orthologues in echinoderms., Long S, Martinez P, Chen WC, Thorndyke M, Byrne M., Dev Genes Evol. November 1, 2003; 213 (11): 573-6.

A sea urchin genome project: sequence scan, virtual map, and additional resources., Cameron RA, Mahairas G, Rast JP, Martinez P, Biondi TR, Swartzell S, Wallace JC, Poustka AJ, Livingston BT, Wray GA, Ettensohn CA, Lehrach H, Britten RJ, Davidson EH, Hood L., Proc Natl Acad Sci U S A. August 15, 2000; 97 (17): 9514-8.

Organization of an echinoderm Hox gene cluster., Martinez P, Rast JP, Arenas-Mena C, Davidson EH., Proc Natl Acad Sci U S A. February 16, 1999; 96 (4): 1469-74.

Expression of the Hox gene complex in the indirect development of a sea urchin., Arenas-Mena C, Martinez P, Cameron RA, Davidson EH., Proc Natl Acad Sci U S A. October 27, 1998; 95 (22): 13062-7.

Complete sequence of SpHox8 and its linkage in the single Hox gene cluster of Strongylocentrotus purpuratus., Martinez P, Lee JC, Davidson EH., J Mol Evol. April 1, 1997; 44 (4): 371-7.

SpHmx, a sea urchin homeobox gene expressed in embryonic pigment cells., Martinez P, Davidson EH., Dev Biol. January 15, 1997; 181 (2): 213-22.

Complexity and organization of DNA-protein interactions in the 5''-regulatory region of an endoderm-specific marker gene in the sea urchin embryo., Yuh CH, Ransick A, Martinez P, Britten RJ, Davidson EH., Mech Dev. August 1, 1994; 47 (2): 165-86.

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