Deep conservation of cis-regulatory elements and chromatin organization in echinoderms uncover ancestral regulatory features of animal genomes. Voronov D , Foley S , Martínez-García PM, Franke M, Cary GA , Santos-Pereira JM, Cuomo C, Fernández-Moreno M, Portela M, Gil-Galvez A, Acemel RD, Paganos P , Ku C , Ranđelović J, Rusciano ML , Firbas PN, Gómez-Skarmeta JL, Hinman VF , Arnone MI , Maeso I., Nat Ecol Evol. January 7, 2026;
New hypotheses of cell type diversity and novelty from orthology-driven comparative single cell and nuclei transcriptomics in echinoderms. Meyer A , Ku C , Hatleberg WL , Telmer CA , Hinman V ., Elife. July 20, 2023; 12
Echinobase: leveraging an extant model organism database to build a knowledgebase supporting research on the genomics and biology of echinoderms. Arshinoff BI , Cary GA , Karimi K , Foley S , Agalakov S , Delgado F , Lotay VS , Ku CJ , Pells TJ , Beatman TR , Kim E , Cameron RA , Vize PD , Telmer CA , Croce JC , Ettensohn CA , Hinman VF ., Nucleic Acids Res. January 7, 2022; 50 (D1): D970-D979.
Classifying domain-specific text documents containing ambiguous keywords. Karimi K , Agalakov S , Telmer CA , Beatman TR , Pells TJ , Arshinoff BI , Ku CJ , Foley S , Hinman VF , Ettensohn CA , Vize PD ., Database (Oxford). September 29, 2021; 2021
Integration of 1:1 orthology maps and updated datasets into Echinobase. Foley S , Ku C , Arshinoff B , Lotay V , Karimi K , Vize PD , Hinman V ., Database (Oxford). May 19, 2021; 2021
