Publications By Takashi Yamamoto

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Light-modulated neural control of sphincter regulation in the evolution of through-gut., Yaguchi J, Sakai K, Horiuchi A, Yamamoto T, Yamashita T, Yaguchi S., Nat Commun. October 18, 2024; 15 (1): 8881.

Cell-wide arrangement of Golgi/RE units depends on the microtubule organization., Tago T, Fujii S, Sasaki S, Shirae-Kurabayashi M, Sakamoto N, Yamamoto T, Maeda M, Ueki T, Satoh T, Satoh AK., Cell Struct Funct. October 3, 2024;

Assembly of continuous high-resolution draft genome sequence of Hemicentrotus pulcherrimus using long-read sequencing., Komoto T, Ikeo K, Yaguchi S, Yamamoto T, Sakamoto N, Awazu A., Dev Growth Differ. May 17, 2024; 66 (4): 297-304.

CRISPR-Cas9-Mediated Gene Knockout in a Non-Model Sea Urchin, Heliocidaris crassispina., Sakamoto N, Watanabe K, Awazu A, Yamamoto T., Zoolog Sci. April 1, 2024; 41 (2): 159-166.

The crucial role of CTCF in mitotic progression during early development of sea urchin., Watanabe K, Fujita M, Okamoto K, Yoshioka H, Moriwaki M, Tagashira H, Awazu A, Yamamoto T, Sakamoto N., Dev Growth Differ. September 1, 2023; 65 (7): 395-407.

Identification of the genes encoding candidate septate junction components expressed during early development of the sea urchin, Strongylocentrotus purpuratus, and evidence of a role for Mesh in the formation of the gut barrier., Jonusaite S, Oulhen N, Izumi Y, Furuse M, Yamamoto T, Sakamoto N, Wessel G, Heyland A., Dev Biol. March 1, 2023; 495 21-34.

Partial exogastrulation due to apical-basal polarity of F-actin distribution disruption in sea urchin embryo by omeprazole., Watanabe K, Yasui Y, Kurose Y, Fujii M, Yamamoto T, Sakamoto N, Awazu A., Genes Cells. June 1, 2022; 27 (6): 392-408.

TrBase: A genome and transcriptome database of Temnopleurus reevesii., Kinjo S, Kiyomoto M, Suzuki H, Yamamoto T, Ikeo K, Yaguchi S., Dev Growth Differ. May 1, 2022; 64 (4): 210-218.

CRISPR-Cas9 editing of non-coding genomic loci as a means of controlling gene expression in the sea urchin., Pieplow A, Dastaw M, Sakuma T, Sakamoto N, Yamamoto T, Yajima M, Oulhen N, Wessel GM., Dev Biol. April 1, 2021; 472 85-97.

Usage of the Sea Urchin Hemicentrotus pulcherrimus Database, HpBase., Kinjo S, Kiyomoto M, Yamamoto T, Ikeo K, Yaguchi S., Methods Mol Biol. January 1, 2021; 2219 267-275.

Invertebrate Gonadotropin-Releasing Hormone Receptor Signaling and Its Relevant Biological Actions., Sakai T, Yamamoto T, Matsubara S, Kawada T, Satake H., Int J Mol Sci. November 12, 2020; 21 (22):

Establishment of homozygous knock-out sea urchins., Yaguchi S, Yaguchi J, Suzuki H, Kinjo S, Kiyomoto M, Ikeo K, Yamamoto T., Curr Biol. May 18, 2020; 30 (10): R427-R429.

Recycling endosomes associate with Golgi stacks in sea urchin embryos., Fujii S, Tago T, Sakamoto N, Yamamoto T, Satoh T, Satoh AK., Commun Integr Biol. April 30, 2020; 13 (1): 59-62.

Establishment of knockout adult sea urchins by using a CRISPR-Cas9 system., Liu D, Awazu A, Sakuma T, Yamamoto T, Sakamoto N., Dev Growth Differ. August 1, 2019; 61 (6): 378-388.

HpBase: A genome database of a sea urchin, Hemicentrotus pulcherrimus., Kinjo S, Kiyomoto M, Yamamoto T, Ikeo K, Yaguchi S., Dev Growth Differ. April 1, 2018; 60 (3): 174-182.

Dynamic changes in the interchromosomal interaction of early histone gene loci during development of sea urchin., Matsushita M, Ochiai H, Suzuki KT, Hayashi S, Yamamoto T, Awazu A, Sakamoto N., J Cell Sci. December 15, 2017; 130 (24): 4097-4107.

Cilia play a role in breaking left-right symmetry of the sea urchin embryo., Takemoto A, Miyamoto T, Simono F, Kurogi N, Shirae-Kurabayashi M, Awazu A, Suzuki KT, Yamamoto T, Sakamoto N., Genes Cells. June 1, 2016; 21 (6): 568-78.

Targeted mutagenesis in sea urchin embryos using TALENs., Hosoi S, Sakuma T, Sakamoto N, Yamamoto T., Dev Growth Differ. January 1, 2014; 56 (1): 92-7.

The 3''UTR of nanos2 directs enrichment in the germ cell lineage of the sea urchin., Oulhen N, Yoshida T, Yajima M, Song JL, Sakuma T, Sakamoto N, Yamamoto T, Wessel GM., Dev Biol. May 1, 2013; 377 (1): 275-83.

Zinc-finger nuclease-mediated targeted insertion of reporter genes for quantitative imaging of gene expression in sea urchin embryos., Ochiai H, Sakamoto N, Fujita K, Nishikawa M, Suzuki K, Matsuura S, Miyamoto T, Sakuma T, Shibata T, Yamamoto T., Proc Natl Acad Sci U S A. July 3, 2012; 109 (27): 10915-20.

Nucleosome exclusion from the interspecies-conserved central AT-rich region of the Ars insulator., Takagi H, Inai Y, Watanabe S, Tatemoto S, Yajima M, Akasaka K, Yamamoto T, Sakamoto N., J Biochem. January 1, 2012; 151 (1): 75-87.

Greatwall kinase and cyclin B-Cdk1 are both critical constituents of M-phase-promoting factor., Hara M, Abe Y, Tanaka T, Yamamoto T, Okumura E, Kishimoto T., Nat Commun. January 1, 2012; 3 1059.

HpSumf1 is involved in the activation of sulfatases responsible for regulation of skeletogenesis during sea urchin development., Sakuma T, Ohnishi K, Fujita K, Ochiai H, Sakamoto N, Yamamoto T., Dev Genes Evol. August 1, 2011; 221 (3): 157-66.

Targeted mutagenesis in the sea urchin embryo using zinc-finger nucleases., Ochiai H, Fujita K, Suzuki K, Nishikawa M, Shibata T, Sakamoto N, Yamamoto T., Genes Cells. August 1, 2010; 15 (8): 875-85.

Implication of HpEts in gene regulatory networks responsible for specification of sea urchin skeletogenic primary mesenchyme cells., Yajima M, Umeda R, Fuchikami T, Kataoka M, Sakamoto N, Yamamoto T, Akasaka K., Zoolog Sci. August 1, 2010; 27 (8): 638-46.

Dicer is required for the normal development of sea urchin, Hemicentrotus pulcherrimus., Okamitsu Y, Yamamoto T, Fujii T, Ochiai H, Sakamoto N., Zoolog Sci. June 1, 2010; 27 (6): 477-86.

HpSulf, a heparan sulfate 6-O-endosulfatase, is involved in the regulation of VEGF signaling during sea urchin development., Fujita K, Takechi E, Sakamoto N, Sumiyoshi N, Izumi S, Miyamoto T, Matsuura S, Tsurugaya T, Akasaka K, Yamamoto T., Mech Dev. April 1, 2010; 127 (3-4): 235-45.

Role of the nanos homolog during sea urchin development., Fujii T, Sakamoto N, Ochiai H, Fujita K, Okamitsu Y, Sumiyoshi N, Minokawa T, Yamamoto T., Dev Dyn. October 1, 2009; 238 (10): 2511-21.

Suppressor of Hairless (Su(H)) is required for foregut development in the sea urchin embryo., Karasawa K, Sakamoto N, Fujita K, Ochiai H, Fujii T, Akasaka K, Yamamoto T., Zoolog Sci. October 1, 2009; 26 (10): 686-90.

The Ars insulator facilitates I-SceI meganuclease-mediated transgenesis in the sea urchin embryo., Ochiai H, Sakamoto N, Suzuki K, Akasaka K, Yamamoto T., Dev Dyn. September 1, 2008; 237 (9): 2475-82.

Analysis of cis-regulatory elements controlling spatio-temporal expression of T-brain gene in sea urchin, Hemicentrotus pulcherrimus., Ochiai H, Sakamoto N, Momiyama A, Akasaka K, Yamamoto T., Mech Dev. January 1, 2008; 125 (1-2): 2-17.

DNA variations within the sea urchin Otx gene enhancer., Yamamoto T, Kawamoto R, Fujii T, Sakamoto N, Shibata T., FEBS Lett. November 13, 2007; 581 (27): 5234-40.

Developmental expression of HpNanos, the Hemicentrotus pulcherrimus homologue of nanos., Fujii T, Mitsunaga-Nakatsubo K, Saito I, Iida H, Sakamoto N, Akasaka K, Yamamoto T., Gene Expr Patterns. June 1, 2006; 6 (5): 572-7.

Unichrom, a novel nuclear matrix protein, binds to the Ars insulator and canonical MARs., Tagashira H, Shimotori T, Sakamoto N, Katahira M, Miyanoiri Y, Yamamoto T, Mitsunaga-Nakatsubo K, Shimada H, Kusunoki S, Akasaka K., Zoolog Sci. January 1, 2006; 23 (1): 9-21.

A new G-stretch-DNA-binding protein, Unichrom, displays cell-cycle-dependent expression in sea urchin embryos., Moritani K, Tagashira H, Shimotori T, Sakamoto N, Tanaka S, Takata K, Mitsunaga-Nakatsubo K, Bojiiwa Y, Yamamoto T, Shimada H, Akasaka K., Dev Growth Differ. August 1, 2004; 46 (4): 335-41.

The Otx binding site is required for the activation of HpOtxL mRNA expression in the sea urchin, Hemicentrotus pulcherrimus., Hayashibara Y, Mitsunaga-Nakatsubo K, Sakamoto N, Shimotori T, Akasaka K, Yamamoto T., Dev Growth Differ. February 1, 2004; 46 (1): 61-7.

Utilization of a particle gun DNA introduction system for the analysis of cis-regulatory elements controlling the spatial expression pattern of the arylsulfatase gene (HpArs) in sea urchin embryos., Kurita M, Kondoh H, Mitsunaga-Nakatsubo K, Shimotori T, Sakamoto N, Yamamoto T, Shimada H, Takata K, Akasaka K., Dev Genes Evol. February 1, 2003; 213 (1): 44-9.

Quantitative changes in yolk protein and other components in the ovary and testis of the sea urchin Pseudocentrotus depressus., Unuma T, Yamamoto T, Akiyama T, Shiraishi M, Ohta H., J Exp Biol. January 1, 2003; 206 (Pt 2): 365-72.

T-brain homologue (HpTb) is involved in the archenteron induction signals of micromere descendant cells in the sea urchin embryo., Fuchikami T, Mitsunaga-Nakatsubo K, Amemiya S, Hosomi T, Watanabe T, Kurokawa D, Kataoka M, Harada Y, Satoh N, Kusunoki S, Takata K, Shimotori T, Yamamoto T, Sakamoto N, Shimada H, Akasaka K., Development. November 1, 2002; 129 (22): 5205-16.

Cloning of dynein intermediate chain cDNA of the newt Cynops pyrrhogaster., Yamamoto T, Matsuda Y, Hikino T, Nakayama Y, Abé S., DNA Res. April 27, 2001; 8 (2): 81-4.

Developmental changes in localization of the main ganglioside during sea urchin embryogenesis., Nezuo M, Shogomori H, Hoshi M, Yamamoto T, Teshima T, Shiba T, Chiba K., Glycobiology. November 1, 2000; 10 (11): 1243-7.

Effect of Steroids on Gonadal Growth and Gametogenesis in the Juvenile Red Sea Urchin Pseudocentrotus depressus., Unuma T, Yamamoto T, Akiyama T., Biol Bull. April 1, 1999; 196 (2): 199-204.

Primary structure of a 120 kDa protein associated with the fucose sulfate glycoconjugate constituting the acrosome reaction-inducing substance of the sea urchin, Hemicentrotus pulcherrimus., Ohbayashi H, Mantoku T, Yamamoto T, Nomura K, Suzuki N., Dev Growth Differ. December 1, 1998; 40 (6): 641-50.

A Protein Identical to the Yolk Protein Is Stored in the Testis in Male Red Sea Urchin, Pseudocentrotus depressus., Unuma T, Suzuki T, Kurokawa T, Yamamoto T, Akiyama T., Biol Bull. February 1, 1998; 194 (1): 92-97.

A triplex DNA structure of the polypyrimidine: polypurine stretch in the 5'' flanking region of the sea urchin arylsulfatase gene., Sakamoto N, Akasaka K, Yamamoto T, Shimada H., Zoolog Sci. February 1, 1996; 13 (1): 105-9.

Corrected Structure of the 5' Flanking Region of Arylsulfatase Gene of the Sea Urchin, Hemicentrotus pulcherrimus: (5' flanking sequence/sea urchin/arylsulfatase gene/G-string)., Akasaka K, Sakamoto N, Yamamoto T, Morokuma J, Fujikawa N, Takata K, Eguchi S, Shimada H., Dev Growth Differ. December 1, 1994; 36 (6): 633-636.

A long polypyrimidine:polypurine sequence in 5'' flanking region of arylsulfatase gene of sea urchin embryo., Yamamoto T, Akasaka K, Irie S, Shimada H., Int J Dev Biol. June 1, 1994; 38 (2): 337-44.

cis-Elements and Protein Factors Related to Regulation of Transcription of Arylsulfatase Gene during Sea Urchin Development: (sea urchin development/Ars gene/cis-elements/enhancer/protein factors)., Yamada K, Yamamoto T, Akasaka K, Shimada H., Dev Growth Differ. December 1, 1993; 35 (6): 703-710.

Cis-Acting Elements for Proper Ontogenic Expression of Arylsulfatase Gene of Sea Urchin Embryo., Yamada K, Eguchi S, Yamamoto T, Akasaka K, Shimada H., Dev Growth Differ. December 1, 1992; 34 (6): 719-729.

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