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Chromosome-level genome assembly and single-cell analysis unveil molecular mechanisms of arm regeneration in the ophiuroid Ophiura sarsii vadicola. Dong Y , Li Z, Ip JC, Galaska MP, Han C, Zhang Q, Sun YY, Zhao LL, Sun KM, Wang ZL, Qiu JW, Zhang XL., Genome Biol. March 31, 2025; 26 (1): 82.
Comprehensive analysis of Metacrinus rotundus full length transcriptome. Dong Y , He X, Han C, Liao X, Mo J, Zhang Q, Zhang X, Wang Z, Xu Q., Sci Rep. February 25, 2025; 15 (1): 6723.
Population genetics and evolutionary history of the intertidal brittle star Ophiothrix (Ophiothrix) exigua in the northern China Sea. Dong Y , Han C, Zeng X, Xiao N, Zhang X, Xu Q., Ecol Evol. September 16, 2024; 14 (9): e70284.
Symbiotic Relationship of Comasterschlegelii (Crinoidea: Comatulidae) and Gymnolophus obscura (Ophiuroidea: Ophiotrichidae) Derived from Stable Isotope and Fatty Acid Analyses. Dong Y , Ge M, Zhang Q, Sun Y, Dai M, Zhang X, Li X, Wang Z, Xu Q., Integr Comp Biol. July 26, 2024; 64 (1): 67-79.
Distinct gut microbial communities and functional predictions in divergent ophiuroid species: host differentiation, ecological niches, and adaptation to cold-water habitats. Dong Y , Li Y, Ge M, Takatsu T, Wang Z, Zhang X, Ding D, Xu Q., Microbiol Spectr. October 27, 2023; e0207323.
Analyses of regulation between miRNA and DNA methyltransferase 1 related genes in sea cucumber Apostichopusjaponicus. Dong Y , Wang B, Guan X, Zhao L, Gao S, Zunchun Z., Fish Shellfish Immunol. October 16, 2023; 143 109169.
Temporal stability and assembly mechanisms of gut microbiota in sea cucumbers response to nanoplastics treatment. Dong Y , Li S, Chen Z, Gao S, Wang B, Xiao Y, Pan Y, Zhou Z ., Ecotoxicol Environ Saf. October 1, 2023; 264 115407.
Functions of lysin motif (LysM)-containing protein in antibacterial responses of sea cucumbers, Apostichopus japonicus. Dong Y , Zhou Z ., Fish Shellfish Immunol. December 1, 2022; 131 1275-1281.
Exploiting the gut microbiota to predict the origins and quality traits of cultured sea cucumbers. Dong Y , Chen Z, Gao S, Xiao Y, Jiang P, Wang X, Zhang G, Wang B, Yu D, Fu Z, Guan X, Sun H, Zhou Z ., Environ Microbiol. September 1, 2022; 24 (9): 3882-3897.
Cloning and characterization of a phosphomevalonate kinase gene that is involved in saponin biosynthesis in the sea cucumber Apostichopus japonicus. Dong Y , Jiang J, Zhou Z ., Fish Shellfish Immunol. September 1, 2022; 128 67-73.
Sea Cucumber Body Vesicular Syndrome Is Driven by the Pond Water Microbiome via an Altered Gut Microbiota. Dong Y , Wang B, Gao S, Chen Z, Guan X, Wang X, Zhou Z ., mSystems. June 28, 2022; 7 (3): e0135721.
Characterization of a synergistic antioxidant synthetic peptide from sea cucumber and pine nut. Dong Y , Sun L, Ma C, Zhang S, Zhong L, Lin S., J Food Sci Technol. June 1, 2022; 59 (6): 2306-2317.
Expression and Biochemical Characterization of a Novel Fucoidanase from Flavobacteriumalgicola with the Principal Product of Fucoidan-Derived Disaccharide. Dong Y , Wang Y , Hamouda HI, Balah MA, Mao X., Foods. April 1, 2022; 11 (7):
The complete mitochondrial genome of Comaster schlegelii (Crinoidea, Comatulida). Dong Y , Xia S, Xu Q., Mitochondrial DNA B Resour. February 3, 2022; 7 (2): 314-316.
Apostichopus japonicus matrix metalloproteinase-16 might act as a pattern recognition receptor. Li L , Zhao Z, Zhao L, Xiao Y, Dong Y , Zhou Z ., Fish Shellfish Immunol. February 1, 2022; 121 135-141.
Proteomics reveals gender differences in physiological characteristics of the gonads and tube feet of the sea cucumber, Apostichopus japonicus. Dong Y , Yang H , Wang X, Guan X, Zhou Z ., J Proteomics. January 16, 2022; 251 104396.
Characterizations and the Mechanism Underlying Osteogenic Activity of Peptides from Enzymatic Hydrolysates of Stichopus japonicus. Dong Y , Wang Z, Du M., J Agric Food Chem. December 29, 2021; 69 (51): 15611-15623.
Neuroprotective effects of NDEELNK from sea cucumber ovum against scopolamine-induced PC12 cell damage through enhancing energy metabolism and upregulation of the PKA/BDNF/NGF signaling pathway. Dong Y , Ge Q, Cui P, Sun N, Lin S., Food Funct. September 7, 2021; 12 (17): 7676-7687.
Divergent metabolic responses to sex and reproduction in the sea cucumber Apostichopus japonicus. Dong Y , He P, Wang B, Pan Y, Wang X, Guan X, Wang C, Lin S, Sun H, Zhou Z ., Comp Biochem Physiol Part D Genomics Proteomics. September 1, 2021; 39 100845.
Gut Microbial Composition and Diversity in Four Ophiuroid Species: Divergence Between Suspension Feeder and Scavenger and Their Symbiotic Microbes. Dong Y , Li Y, He P, Wang Z, Fan S, Zhang Z, Zhang X, Xu Q., Front Microbiol. March 19, 2021; 12 645070.
The effect of ocean acidification on the enzyme activity of Apostichopus japonicus. Dong Y , Xin M, Zhang X, Xu Q., Fish Shellfish Immunol. January 1, 2021; 108 1-6.
Derivedness Index for Estimating Degree of Phenotypic Evolution of Embryos: A Study of Comparative Transcriptomic Analyses of Chordates and Echinoderms. Dong Y , Ren Y, Zhang S, Zeng T, Wang F, Chen L, Wessel G , Livingston BT , Bradham C , Wang W, Irie N., Front Cell Dev Biol. January 1, 2021; 9 749963.
Insights into the DNA methylation of sea cucumber Apostichopus japonicus in response to skin ulceration syndrome infection. Zhou Z , Dong Y , Yang A, Jiang J., Fish Shellfish Immunol. September 1, 2020; 104 155-164.
Genomic insights of body plan transitions from bilateral to pentameral symmetry in Echinoderms. Dong Y , Ren Y, Zhang S, Zeng T, Uesaka M, Uchida Y, Li X, Shibata TF, Bino T, Ogawa K , Shigenobu S, Kondo M , Wang F, Chen L, Wessel G , Saiga H, Cameron RA , Livingston B , Bradham C , Wang W, Irie N., Commun Biol. July 10, 2020; 3 (1): 371.
Proteomics reveals the gender differences in humoral immunity and physiological characteristics associated with reproduction in the sea cucumber Apostichopus japonicus. Dong Y , Gao S, Jiang B, Xiao Y, Jiang P, Zhang G, Wang X, Zhou Z ., J Proteomics. April 15, 2020; 217 103687.
Mechanism of aroma compounds changes from sea cucumber peptide powders (SCPPs) under different storage conditions. Dong Y , Lin S., Food Res Int. February 1, 2020; 128 108757.
Characterization of the complete mitochondrial genome of Amphioplus laevis (Ophiuroidea, Amphiuridae) with phylogenetic analysis. Dong Y ., Mitochondrial DNA B Resour. September 18, 2019; 4 (2): 3062-3063.
Gender specific differences of immune competence in the sea cucumber Apostichopus japonicus before and after spawning. Dong Y , Gao S, Li S, Wang C, Yang H , Lin S, Zhou Z ., Fish Shellfish Immunol. July 1, 2019; 90 73-79.
The formation pattern of off-flavor compounds induced by water migration during the storage of sea cucumber peptide powders (SCPPs). Dong Y , Cheng S, Lin S., Food Chem. February 15, 2019; 274 100-109.
In-depth profiling of miRNA regulation in the body wall of sea cucumber Apostichopus japonicus during skin ulceration syndrome progression. Zhou Z , Dong Y , Yang A, Pan Y, Jiang J, Chen Z, Guan X, Wang B, Gao S, Jiang B., Fish Shellfish Immunol. August 1, 2018; 79 202-208.
Proteomic analysis reveals the important roles of alpha-5-collagen and ATP5β during skin ulceration syndrome progression of sea cucumber Apostichopus japonicus. Dong Y , Zhou Z ., J Proteomics. March 20, 2018; 175 136-143.
Comparative expression analysis of immune-related factors in the sea cucumber Apostichopus japonicus. Zhou Z , Dong Y , Zhao Z, Sun H, Wang B, Jiang B, Chen Z, Gao S., Fish Shellfish Immunol. January 1, 2018; 72 342-347.
Comparative study of three phenoloxidases in the sea cucumber Apostichopus japonicus. Zhou Z , Dong Y , Chen Z, Sun H, Yang A, Gao S, Su H., Fish Shellfish Immunol. August 1, 2017; 67 11-18.
Comparative analysis of immunocompetence between females and males in the sea cucumber Apostichopus japonicus. Zhou Z , Dong Y , Gao S, Sun H, Chen Z, Yang A, Su H., Fish Shellfish Immunol. April 1, 2017; 63 438-443.
Molecular characterization, expression analysis of the Zhou Z , Dong Y , Sun H, Gao S, Chen Z, Yang A, Liu W, Wang Q., Comp Biochem Physiol B Biochem Mol Biol. November 1, 2016; 201 12-20.
Complete mitochondrial genome of Parastichopus californicus (Aspidochirotida: Stichopodidae). Dong Y , Gao X, Gao L, Li S, Liu W, Hou H, Shi J, Pu H., Mitochondrial DNA A DNA Mapp Seq Anal. September 1, 2016; 27 (5): 3569-70.
RNA sequencing analysis to capture the transcriptome landscape during skin ulceration syndrome progression in sea cucumber Apostichopus japonicus. Zhou Z , Pan Y, Jiang J, Dong Y , Guan X, Sun H, Gao S, Chen Z., BMC Genomics. June 14, 2016; 17 459.
Expression analysis of microRNAs related to the skin ulceration syndrome of sea cucumber Apostichopus japonicus. Zhou Z , Dong Y , Yang A, Jiang J, Chen Z, Guan X, Wang B, Gao S, Jiang B., Fish Shellfish Immunol. February 1, 2016; 49 205-12.
Parental Effect of Long Acclimatization on Thermal Tolerance of Dong YW ., PLoS One. November 3, 2015; 10 (11): e0143372.
Identification and characterization of proteins with phenoloxidase-like activities in the sea urchin Strongylocentrotus nudus. Dong Y , Zhou Z ., Fish Shellfish Immunol. November 1, 2015; 47 (1): 117-21.
High-Density Genetic Mapping with Interspecific Hybrids of Two Sea Urchins, Strongylocentrotus nudus and S. intermedius, by RAD Sequencing. Zhou Z , Liu S, Dong Y , Gao S, Chen Z, Jiang J, Yang A, Sun H, Guan X, Jiang B, Wang B., PLoS One. January 1, 2015; 10 (9): e0138585.
Expression analysis of immune related genes identified from the coelomocytes of sea cucumber (Apostichopus japonicus) in response to LPS challenge. Dong Y , Sun H, Zhou Z , Yang A, Chen Z, Guan X, Gao S, Wang B, Jiang B, Jiang J., Int J Mol Sci. October 27, 2014; 15 (11): 19472-86.
In vitro antibacterial analysis of phenoloxidase reaction products from the sea cucumber Apostichopus japonicus. Zhou Z , Dong Y , Cong C, Guan X, Wang B, Chen Z, Jiang B, Yang A, Gao S, Sun H., Fish Shellfish Immunol. August 1, 2014; 39 (2): 458-63.
Characterization of phenoloxidase from the sea cucumber Apostichopus japonicus. Zhou Z , Dong Y , Guan X, Wang B, Jiang B, Yang A, Chen Z, Gao S, Sun H., Immunobiology. June 1, 2014; 219 (6): 450-6.
Phenoloxidase from the sea cucumber Apostichopus japonicus: cDNA cloning, expression and substrate specificity analysis. Zhou Z , Dong Y , Sun H, Chen Z, Yang A, Gao S, Wang B, Jiang B, Guan X., Fish Shellfish Immunol. February 1, 2014; 36 (2): 344-51.
Transcriptome sequencing of sea cucumber (Apostichopus japonicus) and the identification of gene-associated markers. Zhou ZC , Dong Y , Sun HJ, Yang AF, Chen Z, Gao S, Jiang JW, Guan XY, Jiang B, Wang B., Mol Ecol Resour. January 1, 2014; 14 (1): 127-38.
Molecular characterization and expression analysis of heat shock cognate 70 after heat stress and lipopolysaccharide challenge in sea cucumber (Apostichopus japonicus). Zhou Z , Yang A, Dong Y , Chen Z, Guan X, Jiang B, Wang B., Biochem Genet. June 1, 2013; 51 (5-6): 443-57.
Identification and expression analysis of two Zhou Z , Dong Y , Yang A, Jiang B, Gao S, Chen Z, Guan X, Wang B, Wang X., Fish Shellfish Immunol. January 1, 2013; 34 (1): 147-58.
Characterization of fifteen SNP markers by mining EST in sea cucumber, Apostichopus japonicus. Dong Y , Chen Z, Zhou Z ., J Genet. April 2, 2012; 91 (1): e49-53.
Molecular characterization and expression analysis of a complement component 3 in the sea cucumber (Apostichopus japonicus). Zhou Z , Sun D, Yang A, Dong Y , Chen Z, Wang X, Guan X, Jiang B, Wang B., Fish Shellfish Immunol. October 1, 2011; 31 (4): 540-7.
