Danila Voronov - Publications

Publications (8)

ECB-PERS-4255

Publications By Danila Voronov

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Integrative multi-omics increase resolution of the sea urchin posterior gut gene regulatory network at single cell level., Voronov D, Paganos P, Magri MS, Cuomo C, Maeso I, Gómez-Skarmeta JL, Arnone MI., Development. July 26, 2024;
Single-Cell Transcriptomic Analysis Reveals the Molecular Profile of Go-Opsin Photoreceptor Cells in Sea Urchin Larvae., Cocurullo M, Paganos P, Annunziata R, Voronov D, Arnone MI., Cells. August 23, 2023; 12 (17):
Active DNA demethylation of developmental cis-regulatory regions predates vertebrate origins., Skvortsova K, Bertrand S, Voronov D, Duckett PE, Ross SE, Magri MS, Maeso I, Weatheritt RJ, Gómez Skarmeta JL, Arnone MI, Escriva H, Bogdanovic O., Sci Adv. December 2, 2022; 8 (48): eabn2258.
An ancestral Wnt-Brachyury feedback loop in axial patterning and recruitment of mesoderm-determining target genes., Schwaiger M, Andrikou C, Dnyansagar R, Murguia PF, Paganos P, Voronov D, Zimmermann B, Lebedeva T, Schmidt HA, Genikhovich G, Benvenuto G, Arnone MI, Technau U., Nat Ecol Evol. December 1, 2022; 6 (12): 1921-1939.
A New Model Organism to Investigate Extraocular Photoreception: Opsin and Retinal Gene Expression in the Sea Urchin Paracentrotus lividus., Paganos P, Ullrich-Lüter E, Caccavale F, Zakrzewski A, Voronov D, Fournon-Berodia I, Cocurullo M, Lüter C, Arnone MI., Cells. August 24, 2022; 11 (17):
Single-cell RNA sequencing of the Strongylocentrotus purpuratus larva reveals the blueprint of major cell types and nervous system of a non-chordate deuterostome., Paganos P, Voronov D, Musser JM, Arendt D, Arnone MI., Elife. November 25, 2021; 10
ATAC-Seq for Assaying Chromatin Accessibility Protocol Using Echinoderm Embryos., Magri MS, Voronov D, Ranđelović J, Cuomo C, Gómez-Skarmeta JL, Arnone MI., Methods Mol Biol. January 1, 2021; 2219 253-265.
Using ATAC-seq and RNA-seq to increase resolution in GRN connectivity., Lowe EK, Cuomo C, Voronov D, Arnone MI., Methods Cell Biol. January 1, 2019; 151 115-126.

Integrative multi-omics increase resolution of the sea urchin posterior gut gene regulatory network at single cell level., Voronov D, Paganos P, Magri MS, Cuomo C, Maeso I, Gómez-Skarmeta JL, Arnone MI., Development. July 26, 2024;

Single-Cell Transcriptomic Analysis Reveals the Molecular Profile of Go-Opsin Photoreceptor Cells in Sea Urchin Larvae., Cocurullo M, Paganos P, Annunziata R, Voronov D, Arnone MI., Cells. August 23, 2023; 12 (17):

Active DNA demethylation of developmental cis-regulatory regions predates vertebrate origins., Skvortsova K, Bertrand S, Voronov D, Duckett PE, Ross SE, Magri MS, Maeso I, Weatheritt RJ, Gómez Skarmeta JL, Arnone MI, Escriva H, Bogdanovic O., Sci Adv. December 2, 2022; 8 (48): eabn2258.

An ancestral Wnt-Brachyury feedback loop in axial patterning and recruitment of mesoderm-determining target genes., Schwaiger M, Andrikou C, Dnyansagar R, Murguia PF, Paganos P, Voronov D, Zimmermann B, Lebedeva T, Schmidt HA, Genikhovich G, Benvenuto G, Arnone MI, Technau U., Nat Ecol Evol. December 1, 2022; 6 (12): 1921-1939.

A New Model Organism to Investigate Extraocular Photoreception: Opsin and Retinal Gene Expression in the Sea Urchin Paracentrotus lividus., Paganos P, Ullrich-Lüter E, Caccavale F, Zakrzewski A, Voronov D, Fournon-Berodia I, Cocurullo M, Lüter C, Arnone MI., Cells. August 24, 2022; 11 (17):

Single-cell RNA sequencing of the Strongylocentrotus purpuratus larva reveals the blueprint of major cell types and nervous system of a non-chordate deuterostome., Paganos P, Voronov D, Musser JM, Arendt D, Arnone MI., Elife. November 25, 2021; 10

ATAC-Seq for Assaying Chromatin Accessibility Protocol Using Echinoderm Embryos., Magri MS, Voronov D, Ranđelović J, Cuomo C, Gómez-Skarmeta JL, Arnone MI., Methods Mol Biol. January 1, 2021; 2219 253-265.

Using ATAC-seq and RNA-seq to increase resolution in GRN connectivity., Lowe EK, Cuomo C, Voronov D, Arnone MI., Methods Cell Biol. January 1, 2019; 151 115-126.

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