Katherine M Buckley - Publications

Publications (27)

ECB-PERS-4196

Publications By Katherine M Buckley

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Genomic signatures of exceptional longevity and negligible aging in the long-lived red sea urchin., Polinski JM, Castellano KR, Buckley KM, Bodnar AG., Cell Rep. April 1, 2024; 43 (4): 114021.
Extracellular Vesicle Signatures and Post-Translational Protein Deimination in Purple Sea Urchin (Strongylocentrotus purpuratus) Coelomic Fluid-Novel Insights into Echinodermata Biology., D'Alessio S, Buckley KM, Kraev I, Hayes P, Lange S., Biology (Basel). September 3, 2021; 10 (9):
A nomenclature for echinoderm genes., Beatman TR, Buckley KM, Cary GA, Hinman VF, Ettensohn CA., Database (Oxford). August 7, 2021; 2021
Zinc protection of fertilized eggs is an ancient feature of sexual reproduction in animals., Wozniak KL, Bainbridge RE, Summerville DW, Tembo M, Phelps WA, Sauer ML, Wisner BW, Czekalski ME, Pasumarthy S, Hanson ML, Linderman MB, Luu CH, Boehm ME, Sanders SM, Buckley KM, Bain DJ, Nicotra ML, Lee MT, Carlson AE., PLoS Biol. July 1, 2020; 18 (7): e3000811.
Immune activity at the gut epithelium in the larval sea urchin., Buckley KM, Rast JP., Cell Tissue Res. September 1, 2019; 377 (3): 469-474.
Analysis of immune response in the sea urchin larva., Buckley KM, Schuh NW, Heyland A, Rast JP., Methods Cell Biol. January 1, 2019; 150 333-355.
The Axial Organ and the Pharynx Are Sites of Hematopoiesis in the Sea Urchin., Golconda P, Buckley KM, Reynolds CR, Romanello JP, Smith LC., Front Immunol. January 1, 2019; 10 870.
Techniques for analyzing gene expression using BAC-based reporter constructs., Buckley KM, Ettensohn CA., Methods Cell Biol. January 1, 2019; 151 197-218.
Bacterial artificial chromosomes as recombinant reporter constructs to investigate gene expression and regulation in echinoderms., Buckley KM, Dong P, Cameron RA, Rast JP., Brief Funct Genomics. September 27, 2018; 17 (5): 362-371.
AID/APOBEC-like cytidine deaminases are ancient innate immune mediators in invertebrates., Liu MC, Liao WY, Buckley KM, Yang SY, Rast JP, Fugmann SD., Nat Commun. May 16, 2018; 9 (1): 1948.
IL17 factors are early regulators in the gut epithelium during inflammatory response to Vibrio in the sea urchin larva., Buckley KM, Ho ECH, Hibino T, Schrankel CS, Schuh NW, Wang G, Rast JP., Elife. April 27, 2017; 6
An Organismal Model for Gene Regulatory Networks in the Gut-Associated Immune Response., Buckley KM, Rast JP., Front Immunol. March 13, 2017; 8 1297.
Perturbation of gut bacteria induces a coordinated cellular immune response in the purple sea urchin larva., Ch Ho E, Buckley KM, Schrankel CS, Schuh NW, Hibino T, Solek CM, Bae K, Wang G, Rast JP., Immunol Cell Biol. October 1, 2016; 94 (9): 861-874.
A conserved alternative form of the purple sea urchin HEB/E2-2/E2A transcription factor mediates a switch in E-protein regulatory state in differentiating immune cells., Schrankel CS, Solek CM, Buckley KM, Anderson MK, Rast JP., Dev Biol. August 1, 2016; 416 (1): 149-161.
Diversity of animal immune receptors and the origins of recognition complexity in the deuterostomes., Buckley KM, Rast JP., Dev Comp Immunol. March 1, 2015; 49 (1): 179-89.
Dynamic evolution of toll-like receptor multigene families in echinoderms., Buckley KM, Rast JP., Front Immunol. January 1, 2012; 3 136.
An Sp185/333 gene cluster from the purple sea urchin and putative microsatellite-mediated gene diversification., Miller CA, Buckley KM, Easley RL, Smith LC., BMC Genomics. October 18, 2010; 11 575.
Sp185/333: a novel family of genes and proteins involved in the purple sea urchin immune response., Ghosh J, Buckley KM, Nair SV, Raftos DA, Miller C, Majeske AJ, Hibino T, Rast JP, Roth M, Smith LC., Dev Comp Immunol. March 1, 2010; 34 (3): 235-45.
Echinoderm immunity., Smith LC, Ghosh J, Buckley KM, Clow LA, Dheilly NM, Haug T, Henson JH, Li C, Lun CM, Majeske AJ, Matranga V, Nair SV, Rast JP, Raftos DA, Roth M, Sacchi S, Schrankel CS, Stensvåg K., Adv Exp Med Biol. January 1, 2010; 708 260-301.
A method for identifying alternative or cryptic donor splice sites within gene and mRNA sequences. Comparisons among sequences from vertebrates, echinoderms and other groups., Buckley KM, Florea LD, Smith LC., BMC Genomics. July 16, 2009; 10 318.
Sequence variations in 185/333 messages from the purple sea urchin suggest posttranscriptional modifications to increase immune diversity., Buckley KM, Terwilliger DP, Smith LC., J Immunol. December 15, 2008; 181 (12): 8585-94.
The 185/333 gene family is a rapidly diversifying host-defense gene cluster in the purple sea urchin Strongylocentrotus purpuratus., Buckley KM, Munshaw S, Kepler TB, Smith LC., J Mol Biol. June 13, 2008; 379 (4): 912-28.
Extraordinary diversity among members of the large gene family, 185/333, from the purple sea urchin, Strongylocentrotus purpuratus., Buckley KM, Smith LC., BMC Mol Biol. August 15, 2007; 8 68.
Distinctive expression patterns of 185/333 genes in the purple sea urchin, Strongylocentrotus purpuratus: an unexpectedly diverse family of transcripts in response to LPS, beta-1,3-glucan, and dsRNA., Terwilliger DP, Buckley KM, Brockton V, Ritter NJ, Smith LC., BMC Mol Biol. March 1, 2007; 8 16.
The immune gene repertoire encoded in the purple sea urchin genome., Hibino T, Loza-Coll M, Messier C, Majeske AJ, Cohen AH, Terwilliger DP, Buckley KM, Brockton V, Nair SV, Berney K, Fugmann SD, Anderson MK, Pancer Z, Cameron RA, Smith LC, Rast JP., Dev Biol. December 1, 2006; 300 (1): 349-65.
The genome of the sea urchin Strongylocentrotus purpuratus., Sea Urchin Genome Sequencing Consortium, Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, Foltz KR, Hamdoun A, Hynes RO, Klein WH, Marzluff W, McClay DR, Morris RL, Mushegian A, Rast JP, Smith LC, Thorndyke MC, Vacquier VD, Wessel GM, Wray G, Zhang L, Elsik CG, Ermolaeva O, Hlavina W, Hofmann G, Kitts P, Landrum MJ, Mackey AJ, Maglott D, Panopoulou G, Poustka AJ, Pruitt K, Sapojnikov V, Song X, Souvorov A, Solovyev V, Wei Z, Whittaker CA, Worley K, Durbin KJ, Shen Y, Fedrigo O, Garfield D, Haygood R, Primus A, Satija R, Severson T, Gonzalez-Garay ML, Jackson AR, Milosavljevic A, Tong M, Killian CE, Livingston BT, Wilt FH, Adams N, Bellé R, Carbonneau S, Cheung R, Cormier P, Cosson B, Croce J, Fernandez-Guerra A, Genevière AM, Goel M, Kelkar H, Morales J, Mulner-Lorillon O, Robertson AJ, Goldstone JV, Cole B, Epel D, Gold B, Hahn ME, Howard-Ashby M, Scally M, Stegeman JJ, Allgood EL, Cool J, Judkins KM, McCafferty SS, Musante AM, Obar RA, Rawson AP, Rossetti BJ, Gibbons IR, Hoffman MP, Leone A, Istrail S, Materna SC, Samanta MP, Stolc V, Tongprasit W, Tu Q, Bergeron KF, Brandhorst BP, Whittle J, Berney K, Bottjer DJ, Calestani C, Peterson K, Chow E, Yuan QA, Elhaik E, Graur D, Reese JT, Bosdet I, Heesun S, Marra MA, Schein J, Anderson MK, Brockton V, Buckley KM, Cohen AH, Fugmann SD, Hibino T, Loza-Coll M, Majeske AJ, Messier C, Nair SV, Pancer Z, Terwilliger DP, Agca C, Arboleda E, Chen N, Churcher AM, Hallböök F, Humphrey GW, Idris MM, Kiyama T, Liang S, Mellott D, Mu X, Murray G, Olinski RP, Raible F, Rowe M, Taylor JS, Tessmar-Raible K, Wang D, Wilson KH, Yaguchi S, Gaasterland T, Galindo BE, Gunaratne HJ, Juliano C, Kinukawa M, Moy GW, Neill AT, Nomura M, Raisch M, Reade A, Roux MM, Song JL, Su YH, Townley IK, Voronina E, Wong JL, Amore G, Branno M, Brown ER, Cavalieri V, Duboc V, Duloquin L, Flytzanis C, Gache C, Lapraz F, Lepage T, Locascio A, Martinez P, Matassi G, Matranga V, Range R, Rizzo F, Röttinger E, Beane W, Bradham C, Byrum C, Glenn T, Hussain S, Manning G, Miranda E, Thomason R, Walton K, Wikramanayke A, Wu SY, Xu R, Brown CT, Chen L, Gray RF, Lee PY, Nam J, Oliveri P, Smith J, Muzny D, Bell S, Chacko J, Cree A, Curry S, Davis C, Dinh H, Dugan-Rocha S, Fowler J, Gill R, Hamilton C, Hernandez J, Hines S, Hume J, Jackson L, Jolivet A, Kovar C, Lee S, Lewis L, Miner G, Morgan M, Nazareth LV, Okwuonu G, Parker D, Pu LL, Thorn R, Wright R., Science. November 10, 2006; 314 (5801): 941-52.
Unexpected diversity displayed in cDNAs expressed by the immune cells of the purple sea urchin, Strongylocentrotus purpuratus., Terwilliger DP, Buckley KM, Mehta D, Moorjani PG, Smith LC., Physiol Genomics. July 12, 2006; 26 (2): 134-44.

Genomic signatures of exceptional longevity and negligible aging in the long-lived red sea urchin., Polinski JM, Castellano KR, Buckley KM, Bodnar AG., Cell Rep. April 1, 2024; 43 (4): 114021.

Extracellular Vesicle Signatures and Post-Translational Protein Deimination in Purple Sea Urchin (Strongylocentrotus purpuratus) Coelomic Fluid-Novel Insights into Echinodermata Biology., D'Alessio S, Buckley KM, Kraev I, Hayes P, Lange S., Biology (Basel). September 3, 2021; 10 (9):

A nomenclature for echinoderm genes., Beatman TR, Buckley KM, Cary GA, Hinman VF, Ettensohn CA., Database (Oxford). August 7, 2021; 2021

Zinc protection of fertilized eggs is an ancient feature of sexual reproduction in animals., Wozniak KL, Bainbridge RE, Summerville DW, Tembo M, Phelps WA, Sauer ML, Wisner BW, Czekalski ME, Pasumarthy S, Hanson ML, Linderman MB, Luu CH, Boehm ME, Sanders SM, Buckley KM, Bain DJ, Nicotra ML, Lee MT, Carlson AE., PLoS Biol. July 1, 2020; 18 (7): e3000811.

Immune activity at the gut epithelium in the larval sea urchin., Buckley KM, Rast JP., Cell Tissue Res. September 1, 2019; 377 (3): 469-474.

Analysis of immune response in the sea urchin larva., Buckley KM, Schuh NW, Heyland A, Rast JP., Methods Cell Biol. January 1, 2019; 150 333-355.

The Axial Organ and the Pharynx Are Sites of Hematopoiesis in the Sea Urchin., Golconda P, Buckley KM, Reynolds CR, Romanello JP, Smith LC., Front Immunol. January 1, 2019; 10 870.

Techniques for analyzing gene expression using BAC-based reporter constructs., Buckley KM, Ettensohn CA., Methods Cell Biol. January 1, 2019; 151 197-218.

Bacterial artificial chromosomes as recombinant reporter constructs to investigate gene expression and regulation in echinoderms., Buckley KM, Dong P, Cameron RA, Rast JP., Brief Funct Genomics. September 27, 2018; 17 (5): 362-371.

AID/APOBEC-like cytidine deaminases are ancient innate immune mediators in invertebrates., Liu MC, Liao WY, Buckley KM, Yang SY, Rast JP, Fugmann SD., Nat Commun. May 16, 2018; 9 (1): 1948.

IL17 factors are early regulators in the gut epithelium during inflammatory response to Vibrio in the sea urchin larva., Buckley KM, Ho ECH, Hibino T, Schrankel CS, Schuh NW, Wang G, Rast JP., Elife. April 27, 2017; 6

An Organismal Model for Gene Regulatory Networks in the Gut-Associated Immune Response., Buckley KM, Rast JP., Front Immunol. March 13, 2017; 8 1297.

Perturbation of gut bacteria induces a coordinated cellular immune response in the purple sea urchin larva., Ch Ho E, Buckley KM, Schrankel CS, Schuh NW, Hibino T, Solek CM, Bae K, Wang G, Rast JP., Immunol Cell Biol. October 1, 2016; 94 (9): 861-874.

A conserved alternative form of the purple sea urchin HEB/E2-2/E2A transcription factor mediates a switch in E-protein regulatory state in differentiating immune cells., Schrankel CS, Solek CM, Buckley KM, Anderson MK, Rast JP., Dev Biol. August 1, 2016; 416 (1): 149-161.

Diversity of animal immune receptors and the origins of recognition complexity in the deuterostomes., Buckley KM, Rast JP., Dev Comp Immunol. March 1, 2015; 49 (1): 179-89.

Dynamic evolution of toll-like receptor multigene families in echinoderms., Buckley KM, Rast JP., Front Immunol. January 1, 2012; 3 136.

An Sp185/333 gene cluster from the purple sea urchin and putative microsatellite-mediated gene diversification., Miller CA, Buckley KM, Easley RL, Smith LC., BMC Genomics. October 18, 2010; 11 575.

Sp185/333: a novel family of genes and proteins involved in the purple sea urchin immune response., Ghosh J, Buckley KM, Nair SV, Raftos DA, Miller C, Majeske AJ, Hibino T, Rast JP, Roth M, Smith LC., Dev Comp Immunol. March 1, 2010; 34 (3): 235-45.

Echinoderm immunity., Smith LC, Ghosh J, Buckley KM, Clow LA, Dheilly NM, Haug T, Henson JH, Li C, Lun CM, Majeske AJ, Matranga V, Nair SV, Rast JP, Raftos DA, Roth M, Sacchi S, Schrankel CS, Stensvåg K., Adv Exp Med Biol. January 1, 2010; 708 260-301.

A method for identifying alternative or cryptic donor splice sites within gene and mRNA sequences. Comparisons among sequences from vertebrates, echinoderms and other groups., Buckley KM, Florea LD, Smith LC., BMC Genomics. July 16, 2009; 10 318.

Sequence variations in 185/333 messages from the purple sea urchin suggest posttranscriptional modifications to increase immune diversity., Buckley KM, Terwilliger DP, Smith LC., J Immunol. December 15, 2008; 181 (12): 8585-94.

The 185/333 gene family is a rapidly diversifying host-defense gene cluster in the purple sea urchin Strongylocentrotus purpuratus., Buckley KM, Munshaw S, Kepler TB, Smith LC., J Mol Biol. June 13, 2008; 379 (4): 912-28.

Extraordinary diversity among members of the large gene family, 185/333, from the purple sea urchin, Strongylocentrotus purpuratus., Buckley KM, Smith LC., BMC Mol Biol. August 15, 2007; 8 68.

Distinctive expression patterns of 185/333 genes in the purple sea urchin, Strongylocentrotus purpuratus: an unexpectedly diverse family of transcripts in response to LPS, beta-1,3-glucan, and dsRNA., Terwilliger DP, Buckley KM, Brockton V, Ritter NJ, Smith LC., BMC Mol Biol. March 1, 2007; 8 16.

The immune gene repertoire encoded in the purple sea urchin genome., Hibino T, Loza-Coll M, Messier C, Majeske AJ, Cohen AH, Terwilliger DP, Buckley KM, Brockton V, Nair SV, Berney K, Fugmann SD, Anderson MK, Pancer Z, Cameron RA, Smith LC, Rast JP., Dev Biol. December 1, 2006; 300 (1): 349-65.

The genome of the sea urchin Strongylocentrotus purpuratus., Sea Urchin Genome Sequencing Consortium, Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, Foltz KR, Hamdoun A, Hynes RO, Klein WH, Marzluff W, McClay DR, Morris RL, Mushegian A, Rast JP, Smith LC, Thorndyke MC, Vacquier VD, Wessel GM, Wray G, Zhang L, Elsik CG, Ermolaeva O, Hlavina W, Hofmann G, Kitts P, Landrum MJ, Mackey AJ, Maglott D, Panopoulou G, Poustka AJ, Pruitt K, Sapojnikov V, Song X, Souvorov A, Solovyev V, Wei Z, Whittaker CA, Worley K, Durbin KJ, Shen Y, Fedrigo O, Garfield D, Haygood R, Primus A, Satija R, Severson T, Gonzalez-Garay ML, Jackson AR, Milosavljevic A, Tong M, Killian CE, Livingston BT, Wilt FH, Adams N, Bellé R, Carbonneau S, Cheung R, Cormier P, Cosson B, Croce J, Fernandez-Guerra A, Genevière AM, Goel M, Kelkar H, Morales J, Mulner-Lorillon O, Robertson AJ, Goldstone JV, Cole B, Epel D, Gold B, Hahn ME, Howard-Ashby M, Scally M, Stegeman JJ, Allgood EL, Cool J, Judkins KM, McCafferty SS, Musante AM, Obar RA, Rawson AP, Rossetti BJ, Gibbons IR, Hoffman MP, Leone A, Istrail S, Materna SC, Samanta MP, Stolc V, Tongprasit W, Tu Q, Bergeron KF, Brandhorst BP, Whittle J, Berney K, Bottjer DJ, Calestani C, Peterson K, Chow E, Yuan QA, Elhaik E, Graur D, Reese JT, Bosdet I, Heesun S, Marra MA, Schein J, Anderson MK, Brockton V, Buckley KM, Cohen AH, Fugmann SD, Hibino T, Loza-Coll M, Majeske AJ, Messier C, Nair SV, Pancer Z, Terwilliger DP, Agca C, Arboleda E, Chen N, Churcher AM, Hallböök F, Humphrey GW, Idris MM, Kiyama T, Liang S, Mellott D, Mu X, Murray G, Olinski RP, Raible F, Rowe M, Taylor JS, Tessmar-Raible K, Wang D, Wilson KH, Yaguchi S, Gaasterland T, Galindo BE, Gunaratne HJ, Juliano C, Kinukawa M, Moy GW, Neill AT, Nomura M, Raisch M, Reade A, Roux MM, Song JL, Su YH, Townley IK, Voronina E, Wong JL, Amore G, Branno M, Brown ER, Cavalieri V, Duboc V, Duloquin L, Flytzanis C, Gache C, Lapraz F, Lepage T, Locascio A, Martinez P, Matassi G, Matranga V, Range R, Rizzo F, Röttinger E, Beane W, Bradham C, Byrum C, Glenn T, Hussain S, Manning G, Miranda E, Thomason R, Walton K, Wikramanayke A, Wu SY, Xu R, Brown CT, Chen L, Gray RF, Lee PY, Nam J, Oliveri P, Smith J, Muzny D, Bell S, Chacko J, Cree A, Curry S, Davis C, Dinh H, Dugan-Rocha S, Fowler J, Gill R, Hamilton C, Hernandez J, Hines S, Hume J, Jackson L, Jolivet A, Kovar C, Lee S, Lewis L, Miner G, Morgan M, Nazareth LV, Okwuonu G, Parker D, Pu LL, Thorn R, Wright R., Science. November 10, 2006; 314 (5801): 941-52.

Unexpected diversity displayed in cDNAs expressed by the immune cells of the purple sea urchin, Strongylocentrotus purpuratus., Terwilliger DP, Buckley KM, Mehta D, Moorjani PG, Smith LC., Physiol Genomics. July 12, 2006; 26 (2): 134-44.

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