Robert Andrew Cameron - Publications

Publications (71)

ECB-PERS-4104

Publications By Robert Andrew Cameron

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Echinobase: leveraging an extant model organism database to build a knowledgebase supporting research on the genomics and biology of echinoderms., Arshinoff BI, Cary GA, Karimi K, Foley S, Agalakov S, Delgado F, Lotay VS, Ku CJ, Pells TJ, Beatman TR, Kim E, Cameron RA, Vize PD, Telmer CA, Croce JC, Ettensohn CA, Hinman VF., Nucleic Acids Res. January 7, 2022; 50 (D1): D970-D979.
Genomic insights of body plan transitions from bilateral to pentameral symmetry in Echinoderms., Li Y, Omori A, Flores RL, Satterfield S, Nguyen C, Ota T, Tsurugaya T, Ikuta T, Ikeo K, Kikuchi M, Leong JCK, Reich A, Hao M, Wan W, Dong Y, Ren Y, Zhang S, Zeng T, Uesaka M, Uchida Y, Li X, Shibata TF, Bino T, Ogawa K, Shigenobu S, Kondo M, Wang F, Chen L, Wessel G, Saiga H, Cameron RA, Livingston B, Bradham C, Wang W, Irie N., Commun Biol. July 10, 2020; 3 (1): 371.
Developmental effector gene regulation: Multiplexed strategies for functional analysis., Wang L, Koppitch K, Cutting A, Dong P, Kudtarkar P, Zeng J, Cameron RA, Davidson EH., Dev Biol. January 1, 2019; 445 (1): 68-79.
A personal history of the echinoderm genome sequencing., Cameron RA., Methods Cell Biol. January 1, 2019; 151 55-61.
Genomic resources for the study of echinoderm development and evolution., Cary GA, Cameron RA, Hinman VF., Methods Cell Biol. January 1, 2019; 151 65-88.
Bacterial artificial chromosomes as recombinant reporter constructs to investigate gene expression and regulation in echinoderms., Buckley KM, Dong P, Cameron RA, Rast JP., Brief Funct Genomics. September 27, 2018; 17 (5): 362-371.
EchinoBase: Tools for Echinoderm Genome Analyses., Cary GA, Cameron RA, Hinman VF., Methods Mol Biol. January 1, 2018; 1757 349-369.
DNA Extraction Protocols for Whole-Genome Sequencing in Marine Organisms., Panova M, Aronsson H, Cameron RA, Dahl P, Godhe A, Lind U, Ortega-Martinez O, Pereyra R, Tesson SV, Wrange AL, Blomberg A, Johannesson K., Methods Mol Biol. January 1, 2016; 1452 13-44.
Do echinoderm genomes measure up?, Cameron RA, Kudtarkar P, Gordon SM, Worley KC, Gibbs RA., Mar Genomics. August 1, 2015; 22 1-9.
Quantitative developmental transcriptomes of the sea urchin Strongylocentrotus purpuratus., Tu Q, Cameron RA, Davidson EH., Dev Biol. January 15, 2014; 385 (2): 160-7.
Tools for sea urchin genomic analysis., Cameron RA., Methods Mol Biol. January 1, 2014; 1128 295-310.
Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis., Tu Q, Cameron RA, Worley KC, Gibbs RA, Davidson EH., Genome Res. October 1, 2012; 22 (10): 2079-87.
microRNA complements in deuterostomes: origin and evolution of microRNAs., Campo-Paysaa F, Sémon M, Cameron RA, Peterson KJ, Schubert M., Evol Dev. January 1, 2011; 13 (1): 15-27.
Flexibility of transcription factor target site position in conserved cis-regulatory modules., Cameron RA, Davidson EH., Dev Biol. December 1, 2009; 336 (1): 122-35.
SpBase: the sea urchin genome database and web site., Cameron RA, Samanta M, Yuan A, He D, Davidson E., Nucleic Acids Res. January 1, 2009; 37 (Database issue): D750-4.
The larval stages of the sea urchin, Strongylocentrotus purpuratus., Smith MM, Cruz Smith L, Cameron RA, Urry LA., J Morphol. June 1, 2008; 269 (6): 713-33.
The sea urchin genome as a window on function., Materna SC, Cameron RA., Biol Bull. June 1, 2008; 214 (3): 266-73.
Genetic organization and embryonic expression of the ParaHox genes in the sea urchin S. purpuratus: insights into the relationship between clustering and colinearity., Arnone MI, Rizzo F, Annunciata R, Cameron RA, Peterson KJ, Martínez P., Dev Biol. December 1, 2006; 300 (1): 63-73.
The immune gene repertoire encoded in the purple sea urchin genome., Hibino T, Loza-Coll M, Messier C, Majeske AJ, Cohen AH, Terwilliger DP, Buckley KM, Brockton V, Nair SV, Berney K, Fugmann SD, Anderson MK, Pancer Z, Cameron RA, Smith LC, Rast JP., Dev Biol. December 1, 2006; 300 (1): 349-65.
Gene families encoding transcription factors expressed in early development of Strongylocentrotus purpuratus., Howard-Ashby M, Materna SC, Brown CT, Chen L, Cameron RA, Davidson EH., Dev Biol. December 1, 2006; 300 (1): 90-107.
Identification and characterization of homeobox transcription factor genes in Strongylocentrotus purpuratus, and their expression in embryonic development., Howard-Ashby M, Materna SC, Brown CT, Chen L, Cameron RA, Davidson EH., Dev Biol. December 1, 2006; 300 (1): 74-89.
The S. purpuratus genome: a comparative perspective., Materna SC, Berney K, Cameron RA., Dev Biol. December 1, 2006; 300 (1): 485-95.
High regulatory gene use in sea urchin embryogenesis: Implications for bilaterian development and evolution., Howard-Ashby M, Materna SC, Brown CT, Tu Q, Oliveri P, Cameron RA, Davidson EH., Dev Biol. December 1, 2006; 300 (1): 27-34.
The genome of the sea urchin Strongylocentrotus purpuratus., Sea Urchin Genome Sequencing Consortium, Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, Foltz KR, Hamdoun A, Hynes RO, Klein WH, Marzluff W, McClay DR, Morris RL, Mushegian A, Rast JP, Smith LC, Thorndyke MC, Vacquier VD, Wessel GM, Wray G, Zhang L, Elsik CG, Ermolaeva O, Hlavina W, Hofmann G, Kitts P, Landrum MJ, Mackey AJ, Maglott D, Panopoulou G, Poustka AJ, Pruitt K, Sapojnikov V, Song X, Souvorov A, Solovyev V, Wei Z, Whittaker CA, Worley K, Durbin KJ, Shen Y, Fedrigo O, Garfield D, Haygood R, Primus A, Satija R, Severson T, Gonzalez-Garay ML, Jackson AR, Milosavljevic A, Tong M, Killian CE, Livingston BT, Wilt FH, Adams N, Bellé R, Carbonneau S, Cheung R, Cormier P, Cosson B, Croce J, Fernandez-Guerra A, Genevière AM, Goel M, Kelkar H, Morales J, Mulner-Lorillon O, Robertson AJ, Goldstone JV, Cole B, Epel D, Gold B, Hahn ME, Howard-Ashby M, Scally M, Stegeman JJ, Allgood EL, Cool J, Judkins KM, McCafferty SS, Musante AM, Obar RA, Rawson AP, Rossetti BJ, Gibbons IR, Hoffman MP, Leone A, Istrail S, Materna SC, Samanta MP, Stolc V, Tongprasit W, Tu Q, Bergeron KF, Brandhorst BP, Whittle J, Berney K, Bottjer DJ, Calestani C, Peterson K, Chow E, Yuan QA, Elhaik E, Graur D, Reese JT, Bosdet I, Heesun S, Marra MA, Schein J, Anderson MK, Brockton V, Buckley KM, Cohen AH, Fugmann SD, Hibino T, Loza-Coll M, Majeske AJ, Messier C, Nair SV, Pancer Z, Terwilliger DP, Agca C, Arboleda E, Chen N, Churcher AM, Hallböök F, Humphrey GW, Idris MM, Kiyama T, Liang S, Mellott D, Mu X, Murray G, Olinski RP, Raible F, Rowe M, Taylor JS, Tessmar-Raible K, Wang D, Wilson KH, Yaguchi S, Gaasterland T, Galindo BE, Gunaratne HJ, Juliano C, Kinukawa M, Moy GW, Neill AT, Nomura M, Raisch M, Reade A, Roux MM, Song JL, Su YH, Townley IK, Voronina E, Wong JL, Amore G, Branno M, Brown ER, Cavalieri V, Duboc V, Duloquin L, Flytzanis C, Gache C, Lapraz F, Lepage T, Locascio A, Martinez P, Matassi G, Matranga V, Range R, Rizzo F, Röttinger E, Beane W, Bradham C, Byrum C, Glenn T, Hussain S, Manning G, Miranda E, Thomason R, Walton K, Wikramanayke A, Wu SY, Xu R, Brown CT, Chen L, Gray RF, Lee PY, Nam J, Oliveri P, Smith J, Muzny D, Bell S, Chacko J, Cree A, Curry S, Davis C, Dinh H, Dugan-Rocha S, Fowler J, Gill R, Hamilton C, Hernandez J, Hines S, Hume J, Jackson L, Jolivet A, Kovar C, Lee S, Lewis L, Miner G, Morgan M, Nazareth LV, Okwuonu G, Parker D, Pu LL, Thorn R, Wright R., Science. November 10, 2006; 314 (5801): 941-52.
Paleogenomics of echinoderms., Bottjer DJ, Davidson EH, Peterson KJ, Cameron RA., Science. November 10, 2006; 314 (5801): 956-60.
The transcriptome of the sea urchin embryo., Samanta MP, Tongprasit W, Istrail S, Cameron RA, Tu Q, Davidson EH, Stolc V., Science. November 10, 2006; 314 (5801): 960-2.
Hindgut specification and cell-adhesion functions of Sphox11/13b in the endoderm of the sea urchin embryo., Arenas-Mena C, Cameron RA, Davidson EH., Dev Growth Differ. September 1, 2006; 48 (7): 463-72.
An ancient evolutionary origin of the Rag1/2 gene locus., Fugmann SD, Messier C, Novack LA, Cameron RA, Rast JP., Proc Natl Acad Sci U S A. March 7, 2006; 103 (10): 3728-33.
Unusual gene order and organization of the sea urchin hox cluster., Cameron RA, Rowen L, Nesbitt R, Bloom S, Rast JP, Berney K, Arenas-Mena C, Martinez P, Lucas S, Richardson PM, Davidson EH, Peterson KJ, Hood L., J Exp Zool B Mol Dev Evol. January 15, 2006; 306 (1): 45-58.
An evolutionary constraint: strongly disfavored class of change in DNA sequence during divergence of cis-regulatory modules., Cameron RA, Chow SH, Berney K, Chiu TY, Yuan QA, Krämer A, Helguero A, Ransick A, Yun M, Davidson EH., Proc Natl Acad Sci U S A. August 16, 2005; 102 (33): 11769-74.
cis-Regulatory activity of randomly chosen genomic fragments from the sea urchin., Cameron RA, Oliveri P, Wyllie J, Davidson EH., Gene Expr Patterns. March 1, 2004; 4 (2): 205-13.
Genomic resources for the study of sea urchin development., Cameron RA, Rast JP, Brown CT., Methods Cell Biol. January 1, 2004; 74 733-57.
Developmental gene regulatory network architecture across 500 million years of echinoderm evolution., Hinman VF, Nguyen AT, Cameron RA, Davidson EH., Proc Natl Acad Sci U S A. November 11, 2003; 100 (23): 13356-61.
Majority of divergence between closely related DNA samples is due to indels., Britten RJ, Rowen L, Williams J, Cameron RA., Proc Natl Acad Sci U S A. April 15, 2003; 100 (8): 4661-5.
New computational approaches for analysis of cis-regulatory networks., Brown CT, Rust AG, Clarke PJ, Pan Z, Schilstra MJ, De Buysscher T, Griffin G, Wold BJ, Cameron RA, Davidson EH, Bolouri H., Dev Biol. June 1, 2002; 246 (1): 86-102.
A provisional regulatory gene network for specification of endomesoderm in the sea urchin embryo., Davidson EH, Rast JP, Oliveri P, Ransick A, Calestani C, Yuh CH, Minokawa T, Amore G, Hinman V, Arenas-Mena C, Otim O, Brown CT, Livi CB, Lee PY, Revilla R, Schilstra MJ, Clarke PJ, Rust AG, Pan Z, Arnone MI, Rowen L, Cameron RA, McClay DR, Hood L, Bolouri H., Dev Biol. June 1, 2002; 246 (1): 162-90.
brachyury Target genes in the early sea urchin embryo isolated by differential macroarray screening., Rast JP, Cameron RA, Poustka AJ, Davidson EH., Dev Biol. June 1, 2002; 246 (1): 191-208.
A genomic regulatory network for development., Davidson EH, Rast JP, Oliveri P, Ransick A, Calestani C, Yuh CH, Minokawa T, Amore G, Hinman V, Arenas-Mena C, Otim O, Brown CT, Livi CB, Lee PY, Revilla R, Rust AG, Pan Zj, Schilstra MJ, Clarke PJ, Arnone MI, Rowen L, Cameron RA, McClay DR, Hood L, Bolouri H., Science. March 1, 2002; 295 (5560): 1669-78.
A large-scale analysis of mRNAs expressed by primary mesenchyme cells of the sea urchin embryo., Zhu X, Mahairas G, Illies M, Cameron RA, Davidson EH, Ettensohn CA., Development. July 1, 2001; 128 (13): 2615-27.
A sea urchin genome project: sequence scan, virtual map, and additional resources., Cameron RA, Mahairas G, Rast JP, Martinez P, Biondi TR, Swartzell S, Wallace JC, Poustka AJ, Livingston BT, Wray GA, Ettensohn CA, Lehrach H, Britten RJ, Davidson EH, Hood L., Proc Natl Acad Sci U S A. August 15, 2000; 97 (17): 9514-8.
Quantitative assessment of Hox complex expression in the indirect development of the polychaete annelid Chaetopterus sp., Peterson KJ, Irvine SQ, Cameron RA, Davidson EH., Proc Natl Acad Sci U S A. April 25, 2000; 97 (9): 4487-92.
Bilaterian origins: significance of new experimental observations., Peterson KJ, Cameron RA, Davidson EH., Dev Biol. March 1, 2000; 219 (1): 1-17.
EST analysis of gene expression in early cleavage-stage sea urchin embryos., Lee YH, Huang GM, Cameron RA, Graham G, Davidson EH, Hood L, Britten RJ., Development. September 1, 1999; 126 (17): 3857-67.
Microsatellite loci in wild-type and inbred Strongylocentrotus purpuratus., Cameron RA, Leahy PS, Britten RJ, Davidson EH., Dev Biol. April 15, 1999; 208 (2): 255-64.
Expression pattern of Brachyury and Not in the sea urchin: comparative implications for the origins of mesoderm in the basal deuterostomes., Peterson KJ, Harada Y, Cameron RA, Davidson EH., Dev Biol. March 15, 1999; 207 (2): 419-31.
A comparative molecular approach to mesodermal patterning in basal deuterostomes: the expression pattern of Brachyury in the enteropneust hemichordate Ptychodera flava., Peterson KJ, Cameron RA, Tagawa K, Satoh N, Davidson EH., Development. January 1, 1999; 126 (1): 85-95.
Expression of the Hox gene complex in the indirect development of a sea urchin., Arenas-Mena C, Martinez P, Cameron RA, Davidson EH., Proc Natl Acad Sci U S A. October 27, 1998; 95 (22): 13062-7.
Specification of cell fate in the sea urchin embryo: summary and some proposed mechanisms., Davidson EH, Cameron RA, Ransick A., Development. September 1, 1998; 125 (17): 3269-90.
Green Fluorescent Protein in the sea urchin: new experimental approaches to transcriptional regulatory analysis in embryos and larvae., Arnone MI, Bogarad LD, Collazo A, Kirchhamer CV, Cameron RA, Rast JP, Gregorians A, Davidson EH., Development. November 1, 1997; 124 (22): 4649-59.
LiCl perturbs ectodermal veg1 lineage allocations in Strongylocentrotus purpuratus embryos., Cameron RA, Davidson EH., Dev Biol. July 15, 1997; 187 (2): 236-9.

Echinobase: leveraging an extant model organism database to build a knowledgebase supporting research on the genomics and biology of echinoderms., Arshinoff BI, Cary GA, Karimi K, Foley S, Agalakov S, Delgado F, Lotay VS, Ku CJ, Pells TJ, Beatman TR, Kim E, Cameron RA, Vize PD, Telmer CA, Croce JC, Ettensohn CA, Hinman VF., Nucleic Acids Res. January 7, 2022; 50 (D1): D970-D979.

Genomic insights of body plan transitions from bilateral to pentameral symmetry in Echinoderms., Li Y, Omori A, Flores RL, Satterfield S, Nguyen C, Ota T, Tsurugaya T, Ikuta T, Ikeo K, Kikuchi M, Leong JCK, Reich A, Hao M, Wan W, Dong Y, Ren Y, Zhang S, Zeng T, Uesaka M, Uchida Y, Li X, Shibata TF, Bino T, Ogawa K, Shigenobu S, Kondo M, Wang F, Chen L, Wessel G, Saiga H, Cameron RA, Livingston B, Bradham C, Wang W, Irie N., Commun Biol. July 10, 2020; 3 (1): 371.

Developmental effector gene regulation: Multiplexed strategies for functional analysis., Wang L, Koppitch K, Cutting A, Dong P, Kudtarkar P, Zeng J, Cameron RA, Davidson EH., Dev Biol. January 1, 2019; 445 (1): 68-79.

A personal history of the echinoderm genome sequencing., Cameron RA., Methods Cell Biol. January 1, 2019; 151 55-61.

Genomic resources for the study of echinoderm development and evolution., Cary GA, Cameron RA, Hinman VF., Methods Cell Biol. January 1, 2019; 151 65-88.

Bacterial artificial chromosomes as recombinant reporter constructs to investigate gene expression and regulation in echinoderms., Buckley KM, Dong P, Cameron RA, Rast JP., Brief Funct Genomics. September 27, 2018; 17 (5): 362-371.

EchinoBase: Tools for Echinoderm Genome Analyses., Cary GA, Cameron RA, Hinman VF., Methods Mol Biol. January 1, 2018; 1757 349-369.

DNA Extraction Protocols for Whole-Genome Sequencing in Marine Organisms., Panova M, Aronsson H, Cameron RA, Dahl P, Godhe A, Lind U, Ortega-Martinez O, Pereyra R, Tesson SV, Wrange AL, Blomberg A, Johannesson K., Methods Mol Biol. January 1, 2016; 1452 13-44.

Do echinoderm genomes measure up?, Cameron RA, Kudtarkar P, Gordon SM, Worley KC, Gibbs RA., Mar Genomics. August 1, 2015; 22 1-9.

Quantitative developmental transcriptomes of the sea urchin Strongylocentrotus purpuratus., Tu Q, Cameron RA, Davidson EH., Dev Biol. January 15, 2014; 385 (2): 160-7.

Tools for sea urchin genomic analysis., Cameron RA., Methods Mol Biol. January 1, 2014; 1128 295-310.

Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis., Tu Q, Cameron RA, Worley KC, Gibbs RA, Davidson EH., Genome Res. October 1, 2012; 22 (10): 2079-87.

microRNA complements in deuterostomes: origin and evolution of microRNAs., Campo-Paysaa F, Sémon M, Cameron RA, Peterson KJ, Schubert M., Evol Dev. January 1, 2011; 13 (1): 15-27.

Flexibility of transcription factor target site position in conserved cis-regulatory modules., Cameron RA, Davidson EH., Dev Biol. December 1, 2009; 336 (1): 122-35.

SpBase: the sea urchin genome database and web site., Cameron RA, Samanta M, Yuan A, He D, Davidson E., Nucleic Acids Res. January 1, 2009; 37 (Database issue): D750-4.

The larval stages of the sea urchin, Strongylocentrotus purpuratus., Smith MM, Cruz Smith L, Cameron RA, Urry LA., J Morphol. June 1, 2008; 269 (6): 713-33.

The sea urchin genome as a window on function., Materna SC, Cameron RA., Biol Bull. June 1, 2008; 214 (3): 266-73.

Genetic organization and embryonic expression of the ParaHox genes in the sea urchin S. purpuratus: insights into the relationship between clustering and colinearity., Arnone MI, Rizzo F, Annunciata R, Cameron RA, Peterson KJ, Martínez P., Dev Biol. December 1, 2006; 300 (1): 63-73.

The immune gene repertoire encoded in the purple sea urchin genome., Hibino T, Loza-Coll M, Messier C, Majeske AJ, Cohen AH, Terwilliger DP, Buckley KM, Brockton V, Nair SV, Berney K, Fugmann SD, Anderson MK, Pancer Z, Cameron RA, Smith LC, Rast JP., Dev Biol. December 1, 2006; 300 (1): 349-65.

Gene families encoding transcription factors expressed in early development of Strongylocentrotus purpuratus., Howard-Ashby M, Materna SC, Brown CT, Chen L, Cameron RA, Davidson EH., Dev Biol. December 1, 2006; 300 (1): 90-107.

Identification and characterization of homeobox transcription factor genes in Strongylocentrotus purpuratus, and their expression in embryonic development., Howard-Ashby M, Materna SC, Brown CT, Chen L, Cameron RA, Davidson EH., Dev Biol. December 1, 2006; 300 (1): 74-89.

The S. purpuratus genome: a comparative perspective., Materna SC, Berney K, Cameron RA., Dev Biol. December 1, 2006; 300 (1): 485-95.

High regulatory gene use in sea urchin embryogenesis: Implications for bilaterian development and evolution., Howard-Ashby M, Materna SC, Brown CT, Tu Q, Oliveri P, Cameron RA, Davidson EH., Dev Biol. December 1, 2006; 300 (1): 27-34.

The genome of the sea urchin Strongylocentrotus purpuratus., Sea Urchin Genome Sequencing Consortium, Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, Foltz KR, Hamdoun A, Hynes RO, Klein WH, Marzluff W, McClay DR, Morris RL, Mushegian A, Rast JP, Smith LC, Thorndyke MC, Vacquier VD, Wessel GM, Wray G, Zhang L, Elsik CG, Ermolaeva O, Hlavina W, Hofmann G, Kitts P, Landrum MJ, Mackey AJ, Maglott D, Panopoulou G, Poustka AJ, Pruitt K, Sapojnikov V, Song X, Souvorov A, Solovyev V, Wei Z, Whittaker CA, Worley K, Durbin KJ, Shen Y, Fedrigo O, Garfield D, Haygood R, Primus A, Satija R, Severson T, Gonzalez-Garay ML, Jackson AR, Milosavljevic A, Tong M, Killian CE, Livingston BT, Wilt FH, Adams N, Bellé R, Carbonneau S, Cheung R, Cormier P, Cosson B, Croce J, Fernandez-Guerra A, Genevière AM, Goel M, Kelkar H, Morales J, Mulner-Lorillon O, Robertson AJ, Goldstone JV, Cole B, Epel D, Gold B, Hahn ME, Howard-Ashby M, Scally M, Stegeman JJ, Allgood EL, Cool J, Judkins KM, McCafferty SS, Musante AM, Obar RA, Rawson AP, Rossetti BJ, Gibbons IR, Hoffman MP, Leone A, Istrail S, Materna SC, Samanta MP, Stolc V, Tongprasit W, Tu Q, Bergeron KF, Brandhorst BP, Whittle J, Berney K, Bottjer DJ, Calestani C, Peterson K, Chow E, Yuan QA, Elhaik E, Graur D, Reese JT, Bosdet I, Heesun S, Marra MA, Schein J, Anderson MK, Brockton V, Buckley KM, Cohen AH, Fugmann SD, Hibino T, Loza-Coll M, Majeske AJ, Messier C, Nair SV, Pancer Z, Terwilliger DP, Agca C, Arboleda E, Chen N, Churcher AM, Hallböök F, Humphrey GW, Idris MM, Kiyama T, Liang S, Mellott D, Mu X, Murray G, Olinski RP, Raible F, Rowe M, Taylor JS, Tessmar-Raible K, Wang D, Wilson KH, Yaguchi S, Gaasterland T, Galindo BE, Gunaratne HJ, Juliano C, Kinukawa M, Moy GW, Neill AT, Nomura M, Raisch M, Reade A, Roux MM, Song JL, Su YH, Townley IK, Voronina E, Wong JL, Amore G, Branno M, Brown ER, Cavalieri V, Duboc V, Duloquin L, Flytzanis C, Gache C, Lapraz F, Lepage T, Locascio A, Martinez P, Matassi G, Matranga V, Range R, Rizzo F, Röttinger E, Beane W, Bradham C, Byrum C, Glenn T, Hussain S, Manning G, Miranda E, Thomason R, Walton K, Wikramanayke A, Wu SY, Xu R, Brown CT, Chen L, Gray RF, Lee PY, Nam J, Oliveri P, Smith J, Muzny D, Bell S, Chacko J, Cree A, Curry S, Davis C, Dinh H, Dugan-Rocha S, Fowler J, Gill R, Hamilton C, Hernandez J, Hines S, Hume J, Jackson L, Jolivet A, Kovar C, Lee S, Lewis L, Miner G, Morgan M, Nazareth LV, Okwuonu G, Parker D, Pu LL, Thorn R, Wright R., Science. November 10, 2006; 314 (5801): 941-52.

Paleogenomics of echinoderms., Bottjer DJ, Davidson EH, Peterson KJ, Cameron RA., Science. November 10, 2006; 314 (5801): 956-60.

The transcriptome of the sea urchin embryo., Samanta MP, Tongprasit W, Istrail S, Cameron RA, Tu Q, Davidson EH, Stolc V., Science. November 10, 2006; 314 (5801): 960-2.

Hindgut specification and cell-adhesion functions of Sphox11/13b in the endoderm of the sea urchin embryo., Arenas-Mena C, Cameron RA, Davidson EH., Dev Growth Differ. September 1, 2006; 48 (7): 463-72.

An ancient evolutionary origin of the Rag1/2 gene locus., Fugmann SD, Messier C, Novack LA, Cameron RA, Rast JP., Proc Natl Acad Sci U S A. March 7, 2006; 103 (10): 3728-33.

Unusual gene order and organization of the sea urchin hox cluster., Cameron RA, Rowen L, Nesbitt R, Bloom S, Rast JP, Berney K, Arenas-Mena C, Martinez P, Lucas S, Richardson PM, Davidson EH, Peterson KJ, Hood L., J Exp Zool B Mol Dev Evol. January 15, 2006; 306 (1): 45-58.

An evolutionary constraint: strongly disfavored class of change in DNA sequence during divergence of cis-regulatory modules., Cameron RA, Chow SH, Berney K, Chiu TY, Yuan QA, Krämer A, Helguero A, Ransick A, Yun M, Davidson EH., Proc Natl Acad Sci U S A. August 16, 2005; 102 (33): 11769-74.

cis-Regulatory activity of randomly chosen genomic fragments from the sea urchin., Cameron RA, Oliveri P, Wyllie J, Davidson EH., Gene Expr Patterns. March 1, 2004; 4 (2): 205-13.

Genomic resources for the study of sea urchin development., Cameron RA, Rast JP, Brown CT., Methods Cell Biol. January 1, 2004; 74 733-57.

Developmental gene regulatory network architecture across 500 million years of echinoderm evolution., Hinman VF, Nguyen AT, Cameron RA, Davidson EH., Proc Natl Acad Sci U S A. November 11, 2003; 100 (23): 13356-61.

Majority of divergence between closely related DNA samples is due to indels., Britten RJ, Rowen L, Williams J, Cameron RA., Proc Natl Acad Sci U S A. April 15, 2003; 100 (8): 4661-5.

New computational approaches for analysis of cis-regulatory networks., Brown CT, Rust AG, Clarke PJ, Pan Z, Schilstra MJ, De Buysscher T, Griffin G, Wold BJ, Cameron RA, Davidson EH, Bolouri H., Dev Biol. June 1, 2002; 246 (1): 86-102.

A provisional regulatory gene network for specification of endomesoderm in the sea urchin embryo., Davidson EH, Rast JP, Oliveri P, Ransick A, Calestani C, Yuh CH, Minokawa T, Amore G, Hinman V, Arenas-Mena C, Otim O, Brown CT, Livi CB, Lee PY, Revilla R, Schilstra MJ, Clarke PJ, Rust AG, Pan Z, Arnone MI, Rowen L, Cameron RA, McClay DR, Hood L, Bolouri H., Dev Biol. June 1, 2002; 246 (1): 162-90.

brachyury Target genes in the early sea urchin embryo isolated by differential macroarray screening., Rast JP, Cameron RA, Poustka AJ, Davidson EH., Dev Biol. June 1, 2002; 246 (1): 191-208.

A genomic regulatory network for development., Davidson EH, Rast JP, Oliveri P, Ransick A, Calestani C, Yuh CH, Minokawa T, Amore G, Hinman V, Arenas-Mena C, Otim O, Brown CT, Livi CB, Lee PY, Revilla R, Rust AG, Pan Zj, Schilstra MJ, Clarke PJ, Arnone MI, Rowen L, Cameron RA, McClay DR, Hood L, Bolouri H., Science. March 1, 2002; 295 (5560): 1669-78.

A large-scale analysis of mRNAs expressed by primary mesenchyme cells of the sea urchin embryo., Zhu X, Mahairas G, Illies M, Cameron RA, Davidson EH, Ettensohn CA., Development. July 1, 2001; 128 (13): 2615-27.

A sea urchin genome project: sequence scan, virtual map, and additional resources., Cameron RA, Mahairas G, Rast JP, Martinez P, Biondi TR, Swartzell S, Wallace JC, Poustka AJ, Livingston BT, Wray GA, Ettensohn CA, Lehrach H, Britten RJ, Davidson EH, Hood L., Proc Natl Acad Sci U S A. August 15, 2000; 97 (17): 9514-8.

Quantitative assessment of Hox complex expression in the indirect development of the polychaete annelid Chaetopterus sp., Peterson KJ, Irvine SQ, Cameron RA, Davidson EH., Proc Natl Acad Sci U S A. April 25, 2000; 97 (9): 4487-92.

Bilaterian origins: significance of new experimental observations., Peterson KJ, Cameron RA, Davidson EH., Dev Biol. March 1, 2000; 219 (1): 1-17.

EST analysis of gene expression in early cleavage-stage sea urchin embryos., Lee YH, Huang GM, Cameron RA, Graham G, Davidson EH, Hood L, Britten RJ., Development. September 1, 1999; 126 (17): 3857-67.

Microsatellite loci in wild-type and inbred Strongylocentrotus purpuratus., Cameron RA, Leahy PS, Britten RJ, Davidson EH., Dev Biol. April 15, 1999; 208 (2): 255-64.

Expression pattern of Brachyury and Not in the sea urchin: comparative implications for the origins of mesoderm in the basal deuterostomes., Peterson KJ, Harada Y, Cameron RA, Davidson EH., Dev Biol. March 15, 1999; 207 (2): 419-31.

A comparative molecular approach to mesodermal patterning in basal deuterostomes: the expression pattern of Brachyury in the enteropneust hemichordate Ptychodera flava., Peterson KJ, Cameron RA, Tagawa K, Satoh N, Davidson EH., Development. January 1, 1999; 126 (1): 85-95.

Expression of the Hox gene complex in the indirect development of a sea urchin., Arenas-Mena C, Martinez P, Cameron RA, Davidson EH., Proc Natl Acad Sci U S A. October 27, 1998; 95 (22): 13062-7.

Specification of cell fate in the sea urchin embryo: summary and some proposed mechanisms., Davidson EH, Cameron RA, Ransick A., Development. September 1, 1998; 125 (17): 3269-90.

Green Fluorescent Protein in the sea urchin: new experimental approaches to transcriptional regulatory analysis in embryos and larvae., Arnone MI, Bogarad LD, Collazo A, Kirchhamer CV, Cameron RA, Rast JP, Gregorians A, Davidson EH., Development. November 1, 1997; 124 (22): 4649-59.

LiCl perturbs ectodermal veg1 lineage allocations in Strongylocentrotus purpuratus embryos., Cameron RA, Davidson EH., Dev Biol. July 15, 1997; 187 (2): 236-9.

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