Jia Song - Publications

Publications (50)

ECB-PERS-4088

Publications By Jia Song

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Dynamic responses during early development of the sea urchin Strongylocentrotus intermedius to CO2-driven ocean acidification: A microRNA-mRNA integrated analysis., Yin W, Mai W, Cui D, Zhao T, Song J, Zhang W, Chang Y, Zhan Y., Mar Pollut Bull. March 3, 2025; 212 117514.
miR-31-mediated local translation at the mitotic spindle is important for early development., Remsburg CM, Konrad KD, Testa MD, Stepicheva N, Lee K, Choe LH, Polson S, Bhavsar J, Huang H, Song JL., Development. September 1, 2024; 151 (17):
Transcription of microRNAs is regulated by developmental signaling pathways and transcription factors., Arnott M, Sampilo NF, Song JL., Front Cell Dev Biol. April 24, 2024; 12 1356589.
microRNA-1 regulates sea urchin skeletogenesis by directly targeting skeletogenic genes and modulating components of signaling pathways., Sampilo NF, Song JL., Dev Biol. April 1, 2024; 508 123-137.
The characteristic terpenes in sea cucumber soaked in star anise solution were characterized by HS-SPME-GC-MS and PCA analysis., Li X, Jiang P, Song J, Lin S., Food Chem. February 15, 2024; 434 137485.
microRNA-124 directly suppresses Nodal and Notch to regulate mesodermal development., Konrad KD, Arnott M, Testa M, Suarez S, Song JL., Dev Biol. October 1, 2023; 502 50-62.
RNA localization to the mitotic spindle is essential for early development and is regulated by kinesin-1 and dynein., Remsburg CM, Konrad KD, Song JL., J Cell Sci. March 1, 2023; 136 (5):
Polysaccharides from Holothuria leucospilota Relieve Loperamide-Induced Constipation Symptoms in Mice., Wang Z, Shi Y, Zeng S, Zheng Y, Wang H, Liao H, Song J, Zhang X, Cao J, Li C., Int J Mol Sci. January 29, 2023; 24 (3):
microRNA-124 regulates Notch and NeuroD1 to mediate transition states of neuronal development., Konrad KD, Song JL., Dev Neurobiol. January 1, 2023; 83 (1-2): 3-27.
The actin bundling protein Fascin is important for proper early development in Strongylocentrotus purpuratus embryos., Testa MD, Remsburg CM, Song JL., MicroPubl Biol. January 1, 2023; 2023
Identification and functional analysis of foxl2 and nodal in sea cucumber, Apostichopus japonicus., Sun JJ, Sun ZH, Wei JL, Ding J, Song J, Chang YQ., Gene Expr Patterns. June 1, 2022; 44 119245.
Responses of sea urchins (Strongylocentrotus intermedius) with different sexes to CO2-induced seawater acidification: Histology, physiology, and metabolomics., Cui D, Liu L, Zhao T, Zhan Y, Song J, Zhang W, Yin D, Chang Y., Mar Pollut Bull. May 1, 2022; 178 113606.
Identification of a novel RhoA gene in the sea cucumber Apostichopus japonicus and its immune regulatory function via interacting with miR-2012-5p., Liu L, Zhao T, Lin K, Zou Y, Yan H, Zhan Y, Song J, Chang Y., Int J Biol Macromol. April 1, 2022; 203 572-582.
Transcriptomic and Metabolomic Analyses Provide Insights into the Growth and Development Advantages of Triploid Apostichopus japonicus., Xie J, Sun Y, Cao Y, Han L, Li Y, Ding B, Gao C, Hao P, Jin X, Chang Y, Song J, Yin D, Ding J., Mar Biotechnol (NY). March 1, 2022; 24 (1): 151-162.
NeuroD1 localizes to the presumptive ganglia and gut of the sea urchin larvae., Konrad KD, Song JL., MicroPubl Biol. January 1, 2022; 2022
Application of SNP in Genetic Sex Identification and Effect of Estradiol on Gene Expression of Sex-Related Genes in Strongylocentrotus intermedius., Han YL, Sun ZH, Chang S, Wen B, Song J, Zuo RT, Chang YQ., Front Endocrinol (Lausanne). November 11, 2021; 12 756530.
microRNA-31 regulates skeletogenesis by direct suppression of Eve and Wnt1., Sampilo NF, Stepicheva NA, Song JL., Dev Biol. April 1, 2021; 472 98-114.
Rab35 regulates skeletogenesis and gastrulation by facilitating actin remodeling and vesicular trafficking., Remsburg C, Testa M, Song JL., Cells Dev. March 1, 2021; 165 203660.
Identification and functional characterization of piwi1 gene in sea cucumber, Apostichopus japonicas., Sun ZH, Wei JL, Cui ZP, Han YL, Zhang J, Song J, Chang YQ., Comp Biochem Physiol B Biochem Mol Biol. January 1, 2021; 252 110536.
Identification of molecular markers for superior quantitative traits in a novel sea cucumber strain by comparative microRNA-mRNA expression profiling., Chen Y, Li Y, Zhan Y, Hu W, Sun J, Zhang W, Song J, Li D, Chang Y., Comp Biochem Physiol Part D Genomics Proteomics. September 1, 2020; 35 100686.
Transcriptome analysis of body wall reveals growth difference between the largest and smallest individuals in the pure and hybrid populations of Apostichopus japonicus., Gao K, Wang Z, Qiu X, Song J, Wang H, Zhao C, Wang X, Chang Y., Comp Biochem Physiol Part D Genomics Proteomics. September 1, 2019; 31 100591.
The distribution, expression of the Cu/Zn superoxide dismutase in Apostichopus japonicus and its function for sea cucumber immunity., Wang J, Song J, Li Y, Zhou X, Zhang X, Liu T, Liu B, Wang L, Li L, Li C., Fish Shellfish Immunol. June 1, 2019; 89 745-752.
Integration of small RNAs and mRNAs by high-throughput sequencing reveals a complex regulatory network in Chinese sea cucumber, Russian sea cucumber and their hybrids., Wang Z, Cui J, Song J, Gou M, Wang H, Gao K, Qiu X, Wang X, Chang Y., Comp Biochem Physiol Part D Genomics Proteomics. March 1, 2019; 29 1-13.
Comparative transcriptome analysis identifies genes associated with papilla development in the sea cucumber Apostichopus japonicus., Zhan Y, Lin K, Ge C, Che J, Li Y, Cui D, Pei Q, Liu L, Song J, Zhang W, Chang Y., Comp Biochem Physiol Part D Genomics Proteomics. March 1, 2019; 29 255-263.
Analysis of microRNA functions., Remsburg C, Konrad K, Sampilo NF, Song JL., Methods Cell Biol. January 1, 2019; 151 323-334.
Inhibition of microRNA suppression of Dishevelled results in Wnt pathway-associated developmental defects in sea urchin., Sampilo NF, Stepicheva NA, Zaidi SAM, Wang L, Wu W, Wikramanayake A, Song JL., Development. November 30, 2018; 145 (23):
A novel p38 MAPK gene in the sea cucumber Apostichopus japonicus (Ajp38) is associated with the immune response to pathogenic challenge., Zhan Y, Wang Y, Li K, Song J, Chang Y., Fish Shellfish Immunol. October 1, 2018; 81 250-259.
Comparative Transcriptome Analysis Reveals Growth-Related Genes in Juvenile Chinese Sea Cucumber, Russian Sea Cucumber, and Their Hybrids., Wang Z, Cui J, Song J, Wang H, Gao K, Qiu X, Gou M, Li X, Hu Z, Wang X, Chang Y., Mar Biotechnol (NY). April 1, 2018; 20 (2): 193-205.
SLAF-based high-density genetic map construction and QTL mapping for major economic traits in sea urchin Strongylocentrotus intermedius., Chang Y, Ding J, Xu Y, Li D, Zhang W, Li L, Song J., Sci Rep. January 16, 2018; 8 (1): 820.
cDNA cloning, expression and immune function analysis of a novel Rac1 gene (AjRac1) in the sea cucumber Apostichopus japonicus., Li K, Liu L, Shang S, Wang Y, Zhan Y, Song J, Zhang X, Chang Y., Fish Shellfish Immunol. October 1, 2017; 69 218-226.
Habitat suitability index model of the sea cucumber Apostichopus japonicus (Selenka): A case study of Shandong Peninsula, China., Zhang Z, Zhou J, Song J, Wang Q, Liu H, Tang X., Mar Pollut Bull. September 15, 2017; 122 (1-2): 65-76.
A novel MKK gene (AjMKK3/6) in the sea cucumber Apostichopus japonicus: Identification, characterization and its response to pathogenic challenge., Wang Y, Chen G, Li K, Sun J, Song J, Zhan Y, Zhang X, Yang L, Chang Y., Fish Shellfish Immunol. February 1, 2017; 61 24-33.
The small GTPase Arf6 regulates sea urchin morphogenesis., Stepicheva NA, Dumas M, Kobi P, Donaldson JG, Song JL., Differentiation. January 1, 2017; 95 31-43.
Sea cucumber peptides exert anti-inflammatory activity through suppressing NF-κB and MAPK and inducing HO-1 in RAW264.7 macrophages., Song J, Li T, Cheng X, Ji X, Gao D, Du M, Jiang N, Liu X, Mao X., Food Funct. June 15, 2016; 7 (6): 2773-9.
Identification and functional characterization of TNF receptor associated factor 3 in the sea cucumber Apostichopus japonicus., Yang L, Chang Y, Wang Y, Wei J, Ge C, Song J., Dev Comp Immunol. June 1, 2016; 59 128-35.
microRNA-31 modulates skeletal patterning in the sea urchin embryo., Stepicheva NA, Song JL., Development. November 1, 2015; 142 (21): 3769-80.
Identification and characterization a novel transcription factor activator protein-1 in the sea cucumber Apostichopus japonicus., Yang L, Li C, Chang Y, Gao Y, Wang Y, Wei J, Song J, Sun P., Fish Shellfish Immunol. August 1, 2015; 45 (2): 927-32.
microRNAs regulate β-catenin of the Wnt signaling pathway in early sea urchin development., Stepicheva N, Nigam PA, Siddam AD, Peng CF, Song JL., Dev Biol. June 1, 2015; 402 (1): 127-41.
Expression of c-type lysozyme gene in sea cucumber (Apostichopus japonicus) is highly regulated and time dependent after salt stress., Tian Y, Liang XW, Chang YQ, Song J., Comp Biochem Physiol B Biochem Mol Biol. February 1, 2015; 180 68-78.
Piwi regulates Vasa accumulation during embryogenesis in the sea urchin., Yajima M, Gustafson EA, Song JL, Wessel GM., Dev Dyn. March 1, 2014; 243 (3): 451-8.
High throughput microinjections of sea urchin zygotes., Stepicheva NA, Song JL., J Vis Exp. January 21, 2014; (83): e50841.
The 3''UTR of nanos2 directs enrichment in the germ cell lineage of the sea urchin., Oulhen N, Yoshida T, Yajima M, Song JL, Sakuma T, Sakamoto N, Yamamoto T, Wessel GM., Dev Biol. May 1, 2013; 377 (1): 275-83.
Effects of dietary live yeast Hanseniaspora opuntiae C21 on the immune and disease resistance against Vibrio splendidus infection in juvenile sea cucumber Apostichopus japonicus., Ma Y, Liu Z, Yang Z, Li M, Liu J, Song J., Fish Shellfish Immunol. January 1, 2013; 34 (1): 66-73.
The forkhead transcription factor FoxY regulates Nanos., Song JL, Wessel GM., Mol Reprod Dev. October 1, 2012; 79 (10): 680-8.
Select microRNAs are essential for early development in the sea urchin., Song JL, Stoeckius M, Maaskola J, Friedländer M, Stepicheva N, Juliano C, Lebedeva S, Thompson W, Rajewsky N, Wessel GM., Dev Biol. February 1, 2012; 362 (1): 104-13.
The complete mitochondrial genome of Calicogorgia granulosa (Anthozoa: Octocorallia): potential gene novelty in unidentified ORFs formed by repeat expansion and segmental duplication., Park E, Song JI, Won YJ., Gene. October 15, 2011; 486 (1-2): 81-7.
Vasa protein expression is restricted to the small micromeres of the sea urchin, but is inducible in other lineages early in development., Voronina E, Lopez M, Juliano CE, Gustafson E, Song JL, Extavour C, George S, Oliveri P, McClay D, Wessel G., Dev Biol. February 15, 2008; 314 (2): 276-86.
Genes involved in the RNA interference pathway are differentially expressed during sea urchin development., Song JL, Wessel GM., Dev Dyn. November 1, 2007; 236 (11): 3180-90.
Oogenesis: single cell development and differentiation., Song JL, Wong JL, Wessel GM., Dev Biol. December 1, 2006; 300 (1): 385-405.
The genome of the sea urchin Strongylocentrotus purpuratus., Sea Urchin Genome Sequencing Consortium, Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, Foltz KR, Hamdoun A, Hynes RO, Klein WH, Marzluff W, McClay DR, Morris RL, Mushegian A, Rast JP, Smith LC, Thorndyke MC, Vacquier VD, Wessel GM, Wray G, Zhang L, Elsik CG, Ermolaeva O, Hlavina W, Hofmann G, Kitts P, Landrum MJ, Mackey AJ, Maglott D, Panopoulou G, Poustka AJ, Pruitt K, Sapojnikov V, Song X, Souvorov A, Solovyev V, Wei Z, Whittaker CA, Worley K, Durbin KJ, Shen Y, Fedrigo O, Garfield D, Haygood R, Primus A, Satija R, Severson T, Gonzalez-Garay ML, Jackson AR, Milosavljevic A, Tong M, Killian CE, Livingston BT, Wilt FH, Adams N, Bellé R, Carbonneau S, Cheung R, Cormier P, Cosson B, Croce J, Fernandez-Guerra A, Genevière AM, Goel M, Kelkar H, Morales J, Mulner-Lorillon O, Robertson AJ, Goldstone JV, Cole B, Epel D, Gold B, Hahn ME, Howard-Ashby M, Scally M, Stegeman JJ, Allgood EL, Cool J, Judkins KM, McCafferty SS, Musante AM, Obar RA, Rawson AP, Rossetti BJ, Gibbons IR, Hoffman MP, Leone A, Istrail S, Materna SC, Samanta MP, Stolc V, Tongprasit W, Tu Q, Bergeron KF, Brandhorst BP, Whittle J, Berney K, Bottjer DJ, Calestani C, Peterson K, Chow E, Yuan QA, Elhaik E, Graur D, Reese JT, Bosdet I, Heesun S, Marra MA, Schein J, Anderson MK, Brockton V, Buckley KM, Cohen AH, Fugmann SD, Hibino T, Loza-Coll M, Majeske AJ, Messier C, Nair SV, Pancer Z, Terwilliger DP, Agca C, Arboleda E, Chen N, Churcher AM, Hallböök F, Humphrey GW, Idris MM, Kiyama T, Liang S, Mellott D, Mu X, Murray G, Olinski RP, Raible F, Rowe M, Taylor JS, Tessmar-Raible K, Wang D, Wilson KH, Yaguchi S, Gaasterland T, Galindo BE, Gunaratne HJ, Juliano C, Kinukawa M, Moy GW, Neill AT, Nomura M, Raisch M, Reade A, Roux MM, Song JL, Su YH, Townley IK, Voronina E, Wong JL, Amore G, Branno M, Brown ER, Cavalieri V, Duboc V, Duloquin L, Flytzanis C, Gache C, Lapraz F, Lepage T, Locascio A, Martinez P, Matassi G, Matranga V, Range R, Rizzo F, Röttinger E, Beane W, Bradham C, Byrum C, Glenn T, Hussain S, Manning G, Miranda E, Thomason R, Walton K, Wikramanayke A, Wu SY, Xu R, Brown CT, Chen L, Gray RF, Lee PY, Nam J, Oliveri P, Smith J, Muzny D, Bell S, Chacko J, Cree A, Curry S, Davis C, Dinh H, Dugan-Rocha S, Fowler J, Gill R, Hamilton C, Hernandez J, Hines S, Hume J, Jackson L, Jolivet A, Kovar C, Lee S, Lewis L, Miner G, Morgan M, Nazareth LV, Okwuonu G, Parker D, Pu LL, Thorn R, Wright R., Science. November 10, 2006; 314 (5801): 941-52.

Dynamic responses during early development of the sea urchin Strongylocentrotus intermedius to CO2-driven ocean acidification: A microRNA-mRNA integrated analysis., Yin W, Mai W, Cui D, Zhao T, Song J, Zhang W, Chang Y, Zhan Y., Mar Pollut Bull. March 3, 2025; 212 117514.

miR-31-mediated local translation at the mitotic spindle is important for early development., Remsburg CM, Konrad KD, Testa MD, Stepicheva N, Lee K, Choe LH, Polson S, Bhavsar J, Huang H, Song JL., Development. September 1, 2024; 151 (17):

Transcription of microRNAs is regulated by developmental signaling pathways and transcription factors., Arnott M, Sampilo NF, Song JL., Front Cell Dev Biol. April 24, 2024; 12 1356589.

microRNA-1 regulates sea urchin skeletogenesis by directly targeting skeletogenic genes and modulating components of signaling pathways., Sampilo NF, Song JL., Dev Biol. April 1, 2024; 508 123-137.

The characteristic terpenes in sea cucumber soaked in star anise solution were characterized by HS-SPME-GC-MS and PCA analysis., Li X, Jiang P, Song J, Lin S., Food Chem. February 15, 2024; 434 137485.

microRNA-124 directly suppresses Nodal and Notch to regulate mesodermal development., Konrad KD, Arnott M, Testa M, Suarez S, Song JL., Dev Biol. October 1, 2023; 502 50-62.

RNA localization to the mitotic spindle is essential for early development and is regulated by kinesin-1 and dynein., Remsburg CM, Konrad KD, Song JL., J Cell Sci. March 1, 2023; 136 (5):

Polysaccharides from Holothuria leucospilota Relieve Loperamide-Induced Constipation Symptoms in Mice., Wang Z, Shi Y, Zeng S, Zheng Y, Wang H, Liao H, Song J, Zhang X, Cao J, Li C., Int J Mol Sci. January 29, 2023; 24 (3):

microRNA-124 regulates Notch and NeuroD1 to mediate transition states of neuronal development., Konrad KD, Song JL., Dev Neurobiol. January 1, 2023; 83 (1-2): 3-27.

The actin bundling protein Fascin is important for proper early development in Strongylocentrotus purpuratus embryos., Testa MD, Remsburg CM, Song JL., MicroPubl Biol. January 1, 2023; 2023

Identification and functional analysis of foxl2 and nodal in sea cucumber, Apostichopus japonicus., Sun JJ, Sun ZH, Wei JL, Ding J, Song J, Chang YQ., Gene Expr Patterns. June 1, 2022; 44 119245.

Responses of sea urchins (Strongylocentrotus intermedius) with different sexes to CO2-induced seawater acidification: Histology, physiology, and metabolomics., Cui D, Liu L, Zhao T, Zhan Y, Song J, Zhang W, Yin D, Chang Y., Mar Pollut Bull. May 1, 2022; 178 113606.

Identification of a novel RhoA gene in the sea cucumber Apostichopus japonicus and its immune regulatory function via interacting with miR-2012-5p., Liu L, Zhao T, Lin K, Zou Y, Yan H, Zhan Y, Song J, Chang Y., Int J Biol Macromol. April 1, 2022; 203 572-582.

Transcriptomic and Metabolomic Analyses Provide Insights into the Growth and Development Advantages of Triploid Apostichopus japonicus., Xie J, Sun Y, Cao Y, Han L, Li Y, Ding B, Gao C, Hao P, Jin X, Chang Y, Song J, Yin D, Ding J., Mar Biotechnol (NY). March 1, 2022; 24 (1): 151-162.

NeuroD1 localizes to the presumptive ganglia and gut of the sea urchin larvae., Konrad KD, Song JL., MicroPubl Biol. January 1, 2022; 2022

Application of SNP in Genetic Sex Identification and Effect of Estradiol on Gene Expression of Sex-Related Genes in Strongylocentrotus intermedius., Han YL, Sun ZH, Chang S, Wen B, Song J, Zuo RT, Chang YQ., Front Endocrinol (Lausanne). November 11, 2021; 12 756530.

microRNA-31 regulates skeletogenesis by direct suppression of Eve and Wnt1., Sampilo NF, Stepicheva NA, Song JL., Dev Biol. April 1, 2021; 472 98-114.

Rab35 regulates skeletogenesis and gastrulation by facilitating actin remodeling and vesicular trafficking., Remsburg C, Testa M, Song JL., Cells Dev. March 1, 2021; 165 203660.

Identification and functional characterization of piwi1 gene in sea cucumber, Apostichopus japonicas., Sun ZH, Wei JL, Cui ZP, Han YL, Zhang J, Song J, Chang YQ., Comp Biochem Physiol B Biochem Mol Biol. January 1, 2021; 252 110536.

Identification of molecular markers for superior quantitative traits in a novel sea cucumber strain by comparative microRNA-mRNA expression profiling., Chen Y, Li Y, Zhan Y, Hu W, Sun J, Zhang W, Song J, Li D, Chang Y., Comp Biochem Physiol Part D Genomics Proteomics. September 1, 2020; 35 100686.

Transcriptome analysis of body wall reveals growth difference between the largest and smallest individuals in the pure and hybrid populations of Apostichopus japonicus., Gao K, Wang Z, Qiu X, Song J, Wang H, Zhao C, Wang X, Chang Y., Comp Biochem Physiol Part D Genomics Proteomics. September 1, 2019; 31 100591.

The distribution, expression of the Cu/Zn superoxide dismutase in Apostichopus japonicus and its function for sea cucumber immunity., Wang J, Song J, Li Y, Zhou X, Zhang X, Liu T, Liu B, Wang L, Li L, Li C., Fish Shellfish Immunol. June 1, 2019; 89 745-752.

Integration of small RNAs and mRNAs by high-throughput sequencing reveals a complex regulatory network in Chinese sea cucumber, Russian sea cucumber and their hybrids., Wang Z, Cui J, Song J, Gou M, Wang H, Gao K, Qiu X, Wang X, Chang Y., Comp Biochem Physiol Part D Genomics Proteomics. March 1, 2019; 29 1-13.

Comparative transcriptome analysis identifies genes associated with papilla development in the sea cucumber Apostichopus japonicus., Zhan Y, Lin K, Ge C, Che J, Li Y, Cui D, Pei Q, Liu L, Song J, Zhang W, Chang Y., Comp Biochem Physiol Part D Genomics Proteomics. March 1, 2019; 29 255-263.

Analysis of microRNA functions., Remsburg C, Konrad K, Sampilo NF, Song JL., Methods Cell Biol. January 1, 2019; 151 323-334.

Inhibition of microRNA suppression of Dishevelled results in Wnt pathway-associated developmental defects in sea urchin., Sampilo NF, Stepicheva NA, Zaidi SAM, Wang L, Wu W, Wikramanayake A, Song JL., Development. November 30, 2018; 145 (23):

A novel p38 MAPK gene in the sea cucumber Apostichopus japonicus (Ajp38) is associated with the immune response to pathogenic challenge., Zhan Y, Wang Y, Li K, Song J, Chang Y., Fish Shellfish Immunol. October 1, 2018; 81 250-259.

Comparative Transcriptome Analysis Reveals Growth-Related Genes in Juvenile Chinese Sea Cucumber, Russian Sea Cucumber, and Their Hybrids., Wang Z, Cui J, Song J, Wang H, Gao K, Qiu X, Gou M, Li X, Hu Z, Wang X, Chang Y., Mar Biotechnol (NY). April 1, 2018; 20 (2): 193-205.

SLAF-based high-density genetic map construction and QTL mapping for major economic traits in sea urchin Strongylocentrotus intermedius., Chang Y, Ding J, Xu Y, Li D, Zhang W, Li L, Song J., Sci Rep. January 16, 2018; 8 (1): 820.

cDNA cloning, expression and immune function analysis of a novel Rac1 gene (AjRac1) in the sea cucumber Apostichopus japonicus., Li K, Liu L, Shang S, Wang Y, Zhan Y, Song J, Zhang X, Chang Y., Fish Shellfish Immunol. October 1, 2017; 69 218-226.

Habitat suitability index model of the sea cucumber Apostichopus japonicus (Selenka): A case study of Shandong Peninsula, China., Zhang Z, Zhou J, Song J, Wang Q, Liu H, Tang X., Mar Pollut Bull. September 15, 2017; 122 (1-2): 65-76.

A novel MKK gene (AjMKK3/6) in the sea cucumber Apostichopus japonicus: Identification, characterization and its response to pathogenic challenge., Wang Y, Chen G, Li K, Sun J, Song J, Zhan Y, Zhang X, Yang L, Chang Y., Fish Shellfish Immunol. February 1, 2017; 61 24-33.

The small GTPase Arf6 regulates sea urchin morphogenesis., Stepicheva NA, Dumas M, Kobi P, Donaldson JG, Song JL., Differentiation. January 1, 2017; 95 31-43.

Sea cucumber peptides exert anti-inflammatory activity through suppressing NF-κB and MAPK and inducing HO-1 in RAW264.7 macrophages., Song J, Li T, Cheng X, Ji X, Gao D, Du M, Jiang N, Liu X, Mao X., Food Funct. June 15, 2016; 7 (6): 2773-9.

Identification and functional characterization of TNF receptor associated factor 3 in the sea cucumber Apostichopus japonicus., Yang L, Chang Y, Wang Y, Wei J, Ge C, Song J., Dev Comp Immunol. June 1, 2016; 59 128-35.

microRNA-31 modulates skeletal patterning in the sea urchin embryo., Stepicheva NA, Song JL., Development. November 1, 2015; 142 (21): 3769-80.

Identification and characterization a novel transcription factor activator protein-1 in the sea cucumber Apostichopus japonicus., Yang L, Li C, Chang Y, Gao Y, Wang Y, Wei J, Song J, Sun P., Fish Shellfish Immunol. August 1, 2015; 45 (2): 927-32.

microRNAs regulate β-catenin of the Wnt signaling pathway in early sea urchin development., Stepicheva N, Nigam PA, Siddam AD, Peng CF, Song JL., Dev Biol. June 1, 2015; 402 (1): 127-41.

Expression of c-type lysozyme gene in sea cucumber (Apostichopus japonicus) is highly regulated and time dependent after salt stress., Tian Y, Liang XW, Chang YQ, Song J., Comp Biochem Physiol B Biochem Mol Biol. February 1, 2015; 180 68-78.

Piwi regulates Vasa accumulation during embryogenesis in the sea urchin., Yajima M, Gustafson EA, Song JL, Wessel GM., Dev Dyn. March 1, 2014; 243 (3): 451-8.

High throughput microinjections of sea urchin zygotes., Stepicheva NA, Song JL., J Vis Exp. January 21, 2014; (83): e50841.

The 3''UTR of nanos2 directs enrichment in the germ cell lineage of the sea urchin., Oulhen N, Yoshida T, Yajima M, Song JL, Sakuma T, Sakamoto N, Yamamoto T, Wessel GM., Dev Biol. May 1, 2013; 377 (1): 275-83.

Effects of dietary live yeast Hanseniaspora opuntiae C21 on the immune and disease resistance against Vibrio splendidus infection in juvenile sea cucumber Apostichopus japonicus., Ma Y, Liu Z, Yang Z, Li M, Liu J, Song J., Fish Shellfish Immunol. January 1, 2013; 34 (1): 66-73.

The forkhead transcription factor FoxY regulates Nanos., Song JL, Wessel GM., Mol Reprod Dev. October 1, 2012; 79 (10): 680-8.

Select microRNAs are essential for early development in the sea urchin., Song JL, Stoeckius M, Maaskola J, Friedländer M, Stepicheva N, Juliano C, Lebedeva S, Thompson W, Rajewsky N, Wessel GM., Dev Biol. February 1, 2012; 362 (1): 104-13.

The complete mitochondrial genome of Calicogorgia granulosa (Anthozoa: Octocorallia): potential gene novelty in unidentified ORFs formed by repeat expansion and segmental duplication., Park E, Song JI, Won YJ., Gene. October 15, 2011; 486 (1-2): 81-7.

Vasa protein expression is restricted to the small micromeres of the sea urchin, but is inducible in other lineages early in development., Voronina E, Lopez M, Juliano CE, Gustafson E, Song JL, Extavour C, George S, Oliveri P, McClay D, Wessel G., Dev Biol. February 15, 2008; 314 (2): 276-86.

Genes involved in the RNA interference pathway are differentially expressed during sea urchin development., Song JL, Wessel GM., Dev Dyn. November 1, 2007; 236 (11): 3180-90.

Oogenesis: single cell development and differentiation., Song JL, Wong JL, Wessel GM., Dev Biol. December 1, 2006; 300 (1): 385-405.

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