Paola Oliveri - Publications

Publications (48)

ECB-PERS-4084

Publications By Paola Oliveri

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Functional Analyses of Four Cryptochromes From Aquatic Organisms After Heterologous Expression in Drosophila melanogaster Circadian Clock Cells., Chen C, Tamai TK, Xu M, Petrone L, Oliveri P, Whitmore D, Stanewsky R., J Biol Rhythms. March 28, 2024; 7487304241228617.
Molecular and Cellular Characterization of the TH Pathway in the Sea Urchin Strongylocentrotus purpuratus., Cocurullo M, Paganos P, Wood NJ, Arnone MI, Oliveri P., Cells. January 10, 2023; 12 (2):
Neurogenesis during Brittle Star Arm Regeneration Is Characterised by a Conserved Set of Key Developmental Genes., Czarkwiani A, Taylor J, Oliveri P., Biology (Basel). September 16, 2022; 11 (9):
The Development and Neuronal Complexity of Bipinnaria Larvae of the Sea Star Asterias rubens., Carter HF, Thompson JR, Elphick MR, Oliveri P., Integr Comp Biol. September 8, 2021; 61 (2): 337-351.
FGF signalling plays similar roles in development and regeneration of the skeleton in the brittle star Amphiura filiformis., Czarkwiani A, Dylus DV, Carballo L, Oliveri P., Development. May 15, 2021; 148 (10):
Post-metamorphic skeletal growth in the sea urchin Paracentrotus lividus and implications for body plan evolution., Thompson JR, Paganos P, Benvenuto G, Arnone MI, Oliveri P., Evodevo. March 16, 2021; 12 (1): 3.
Ultrastructural and molecular analysis of the origin and differentiation of cells mediating brittle star skeletal regeneration., Piovani L, Czarkwiani A, Ferrario C, Sugni M, Oliveri P., BMC Biol. January 18, 2021; 19 (1): 9.
Extracellular matrix gene expression during arm regeneration in Amphiura filiformis., Ferrario C, Czarkwiani A, Dylus DV, Piovani L, Candia Carnevali MD, Sugni M, Oliveri P., Cell Tissue Res. September 1, 2020; 381 (3): 411-426.
Unravelling the evolutionary history of kisspeptin., Arnone MI, Oliveri P., Elife. June 15, 2020; 9
Evolutionary transition between invertebrates and vertebrates via methylation reprogramming in embryogenesis., Xu X, Li G, Li C, Zhang J, Wang Q, Simmons DK, Chen X, Wijesena N, Zhu W, Wang Z, Wang Z, Ju B, Ci W, Lu X, Yu D, Wang QF, Aluru N, Oliveri P, Zhang YE, Martindale MQ, Liu J., Natl Sci Rev. October 1, 2019; 6 (5): 993-1003.
Developmental transcriptomics of the brittle star Amphiura filiformis reveals gene regulatory network rewiring in echinoderm larval skeleton evolution., Dylus DV, Czarkwiani A, Blowes LM, Elphick MR, Oliveri P., Genome Biol. February 28, 2018; 19 (1): 26.
Fundamental aspects of arm repair phase in two echinoderm models., Ferrario C, Ben Khadra Y, Czarkwiani A, Zakrzewski A, Martinez P, Colombo G, Bonasoro F, Candia Carnevali MD, Oliveri P, Sugni M., Dev Biol. January 15, 2018; 433 (2): 297-309.
Neuropeptidergic Systems in Pluteus Larvae of the Sea Urchin Strongylocentrotus purpuratus: Neurochemical Complexity in a "Simple" Nervous System., Wood NJ, Mattiello T, Rowe ML, Ward L, Perillo M, Arnone MI, Elphick MR, Oliveri P., Front Endocrinol (Lausanne). January 1, 2018; 9 628.
New Neuronal Subtypes With a "Pre-Pancreatic" Signature in the Sea Urchin Stongylocentrotus purpuratus., Perillo M, Paganos P, Mattiello T, Cocurullo M, Oliveri P, Arnone MI., Front Endocrinol (Lausanne). January 1, 2018; 9 650.
Large-scale gene expression study in the ophiuroid Amphiura filiformis provides insights into evolution of gene regulatory networks., Dylus DV, Czarkwiani A, Stångberg J, Ortega-Martinez O, Dupont S, Oliveri P., Evodevo. January 1, 2016; 7 2.
Skeletal regeneration in the brittle star Amphiura filiformis., Czarkwiani A, Ferrario C, Dylus DV, Sugni M, Oliveri P., Front Zool. January 1, 2016; 13 18.
Discovery of sea urchin NGFFFamide receptor unites a bilaterian neuropeptide family., Semmens DC, Beets I, Rowe ML, Blowes LM, Oliveri P, Elphick MR., Open Biol. April 1, 2015; 5 (4): 150030.
A cnidarian homologue of an insect gustatory receptor functions in developmental body patterning., Saina M, Busengdal H, Sinigaglia C, Petrone L, Oliveri P, Rentzsch F, Benton R., Nat Commun. February 18, 2015; 6 6243.
NAD kinase controls animal NADP biosynthesis and is modulated via evolutionarily divergent calmodulin-dependent mechanisms., Love NR, Pollak N, Dölle C, Niere M, Chen Y, Oliveri P, Amaya E, Patel S, Ziegler M., Proc Natl Acad Sci U S A. February 3, 2015; 112 (5): 1386-91.
Molecular characterization of the apical organ of the anthozoan Nematostella vectensis., Sinigaglia C, Busengdal H, Lerner A, Oliveri P, Rentzsch F., Dev Biol. February 1, 2015; 398 (1): 120-33.
Phylogenomic analysis of echinoderm class relationships supports Asterozoa., Telford MJ, Lowe CJ, Cameron CB, Ortega-Martinez O, Aronowicz J, Oliveri P, Copley RR., Proc Biol Sci. July 7, 2014; 281 (1786):
The Cryptochrome/Photolyase Family in aquatic organisms., Oliveri P, Fortunato AE, Petrone L, Ishikawa-Fujiwara T, Kobayashi Y, Todo T, Antonova O, Arboleda E, Zantke J, Tessmar-Raible K, Falciatore A., Mar Genomics. April 1, 2014; 14 23-37.
Myogenesis in the sea urchin embryo: the molecular fingerprint of the myoblast precursors., Andrikou C, Iovene E, Rizzo F, Oliveri P, Arnone MI., Evodevo. December 2, 2013; 4 (1): 33.
Expression of skeletogenic genes during arm regeneration in the brittle star Amphiura filiformis., Czarkwiani A, Dylus DV, Oliveri P., Gene Expr Patterns. December 1, 2013; 13 (8): 464-72.
An ancient role for Gata-1/2/3 and Scl transcription factor homologs in the development of immunocytes., Solek CM, Oliveri P, Loza-Coll M, Schrankel CS, Ho EC, Wang G, Rast JP., Dev Biol. October 1, 2013; 382 (1): 280-92.
The cis-regulatory system of the tbrain gene: Alternative use of multiple modules to promote skeletogenic expression in the sea urchin embryo., Wahl ME, Hahn J, Gora K, Davidson EH, Oliveri P., Dev Biol. November 15, 2009; 335 (2): 428-41.
Global regulatory logic for specification of an embryonic cell lineage., Oliveri P, Tu Q, Davidson EH., Proc Natl Acad Sci U S A. April 22, 2008; 105 (16): 5955-62.
Vasa protein expression is restricted to the small micromeres of the sea urchin, but is inducible in other lineages early in development., Voronina E, Lopez M, Juliano CE, Gustafson E, Song JL, Extavour C, George S, Oliveri P, McClay D, Wessel G., Dev Biol. February 15, 2008; 314 (2): 276-86.
A protocol for unraveling gene regulatory networks., Materna SC, Oliveri P., Nat Protoc. January 1, 2008; 3 (12): 1876-87.
A missing link in the sea urchin embryo gene regulatory network: hesC and the double-negative specification of micromeres., Revilla-i-Domingo R, Oliveri P, Davidson EH., Proc Natl Acad Sci U S A. July 24, 2007; 104 (30): 12383-8.
Sea urchin Forkhead gene family: phylogeny and embryonic expression., Tu Q, Brown CT, Davidson EH, Oliveri P., Dev Biol. December 1, 2006; 300 (1): 49-62.
High regulatory gene use in sea urchin embryogenesis: Implications for bilaterian development and evolution., Howard-Ashby M, Materna SC, Brown CT, Tu Q, Oliveri P, Cameron RA, Davidson EH., Dev Biol. December 1, 2006; 300 (1): 27-34.
The genome of the sea urchin Strongylocentrotus purpuratus., Sea Urchin Genome Sequencing Consortium, Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, Foltz KR, Hamdoun A, Hynes RO, Klein WH, Marzluff W, McClay DR, Morris RL, Mushegian A, Rast JP, Smith LC, Thorndyke MC, Vacquier VD, Wessel GM, Wray G, Zhang L, Elsik CG, Ermolaeva O, Hlavina W, Hofmann G, Kitts P, Landrum MJ, Mackey AJ, Maglott D, Panopoulou G, Poustka AJ, Pruitt K, Sapojnikov V, Song X, Souvorov A, Solovyev V, Wei Z, Whittaker CA, Worley K, Durbin KJ, Shen Y, Fedrigo O, Garfield D, Haygood R, Primus A, Satija R, Severson T, Gonzalez-Garay ML, Jackson AR, Milosavljevic A, Tong M, Killian CE, Livingston BT, Wilt FH, Adams N, Bellé R, Carbonneau S, Cheung R, Cormier P, Cosson B, Croce J, Fernandez-Guerra A, Genevière AM, Goel M, Kelkar H, Morales J, Mulner-Lorillon O, Robertson AJ, Goldstone JV, Cole B, Epel D, Gold B, Hahn ME, Howard-Ashby M, Scally M, Stegeman JJ, Allgood EL, Cool J, Judkins KM, McCafferty SS, Musante AM, Obar RA, Rawson AP, Rossetti BJ, Gibbons IR, Hoffman MP, Leone A, Istrail S, Materna SC, Samanta MP, Stolc V, Tongprasit W, Tu Q, Bergeron KF, Brandhorst BP, Whittle J, Berney K, Bottjer DJ, Calestani C, Peterson K, Chow E, Yuan QA, Elhaik E, Graur D, Reese JT, Bosdet I, Heesun S, Marra MA, Schein J, Anderson MK, Brockton V, Buckley KM, Cohen AH, Fugmann SD, Hibino T, Loza-Coll M, Majeske AJ, Messier C, Nair SV, Pancer Z, Terwilliger DP, Agca C, Arboleda E, Chen N, Churcher AM, Hallböök F, Humphrey GW, Idris MM, Kiyama T, Liang S, Mellott D, Mu X, Murray G, Olinski RP, Raible F, Rowe M, Taylor JS, Tessmar-Raible K, Wang D, Wilson KH, Yaguchi S, Gaasterland T, Galindo BE, Gunaratne HJ, Juliano C, Kinukawa M, Moy GW, Neill AT, Nomura M, Raisch M, Reade A, Roux MM, Song JL, Su YH, Townley IK, Voronina E, Wong JL, Amore G, Branno M, Brown ER, Cavalieri V, Duboc V, Duloquin L, Flytzanis C, Gache C, Lapraz F, Lepage T, Locascio A, Martinez P, Matassi G, Matranga V, Range R, Rizzo F, Röttinger E, Beane W, Bradham C, Byrum C, Glenn T, Hussain S, Manning G, Miranda E, Thomason R, Walton K, Wikramanayke A, Wu SY, Xu R, Brown CT, Chen L, Gray RF, Lee PY, Nam J, Oliveri P, Smith J, Muzny D, Bell S, Chacko J, Cree A, Curry S, Davis C, Dinh H, Dugan-Rocha S, Fowler J, Gill R, Hamilton C, Hernandez J, Hines S, Hume J, Jackson L, Jolivet A, Kovar C, Lee S, Lewis L, Miner G, Morgan M, Nazareth LV, Okwuonu G, Parker D, Pu LL, Thorn R, Wright R., Science. November 10, 2006; 314 (5801): 941-52.
Repression of mesodermal fate by foxa, a key endoderm regulator of the sea urchin embryo., Oliveri P, Walton KD, Davidson EH, McClay DR., Development. November 1, 2006; 133 (21): 4173-81.
Gene regulatory network controlling embryonic specification in the sea urchin., Oliveri P, Davidson EH., Curr Opin Genet Dev. August 1, 2004; 14 (4): 351-60.
Expression of an NK2 homeodomain gene in the apical ectoderm defines a new territory in the early sea urchin embryo., Takacs CM, Amore G, Oliveri P, Poustka AJ, Wang D, Burke RD, Peterson KJ., Dev Biol. May 1, 2004; 269 (1): 152-64.
cis-Regulatory activity of randomly chosen genomic fragments from the sea urchin., Cameron RA, Oliveri P, Wyllie J, Davidson EH., Gene Expr Patterns. March 1, 2004; 4 (2): 205-13.
Gene regulatory network analysis in sea urchin embryos., Oliveri P, Davidson EH., Methods Cell Biol. January 1, 2004; 74 775-94.
Alx1, a member of the Cart1/Alx3/Alx4 subfamily of Paired-class homeodomain proteins, is an essential component of the gene network controlling skeletogenic fate specification in the sea urchin embryo., Ettensohn CA, Illies MR, Oliveri P, De Jong DL., Development. July 1, 2003; 130 (13): 2917-28.
Activation of pmar1 controls specification of micromeres in the sea urchin embryo., Oliveri P, Davidson EH, McClay DR., Dev Biol. June 1, 2003; 258 (1): 32-43.
Quantitative imaging of cis-regulatory reporters in living embryos., Dmochowski IJ, Dmochowski JE, Oliveri P, Davidson EH, Fraser SE., Proc Natl Acad Sci U S A. October 1, 2002; 99 (20): 12895-900.
A provisional regulatory gene network for specification of endomesoderm in the sea urchin embryo., Davidson EH, Rast JP, Oliveri P, Ransick A, Calestani C, Yuh CH, Minokawa T, Amore G, Hinman V, Arenas-Mena C, Otim O, Brown CT, Livi CB, Lee PY, Revilla R, Schilstra MJ, Clarke PJ, Rust AG, Pan Z, Arnone MI, Rowen L, Cameron RA, McClay DR, Hood L, Bolouri H., Dev Biol. June 1, 2002; 246 (1): 162-90.
A regulatory gene network that directs micromere specification in the sea urchin embryo., Oliveri P, Carrick DM, Davidson EH., Dev Biol. June 1, 2002; 246 (1): 209-28.
A genomic regulatory network for development., Davidson EH, Rast JP, Oliveri P, Ransick A, Calestani C, Yuh CH, Minokawa T, Amore G, Hinman V, Arenas-Mena C, Otim O, Brown CT, Livi CB, Lee PY, Revilla R, Rust AG, Pan Zj, Schilstra MJ, Clarke PJ, Arnone MI, Rowen L, Cameron RA, McClay DR, Hood L, Bolouri H., Science. March 1, 2002; 295 (5560): 1669-78.
Homeobox genes and sea urchin development., Di Bernardo M, Bellomonte D, Castagnetti S, Melfi R, Oliveri P, Spinelli G., Int J Dev Biol. January 1, 2000; 44 (6): 637-43.
Spatially restricted expression of PlOtp, a Paracentrotus lividus orthopedia-related homeobox gene, is correlated with oral ectodermal patterning and skeletal morphogenesis in late-cleavage sea urchin embryos., Di Bernardo M, Castagnetti S, Bellomonte D, Oliveri P, Melfi R, Palla F, Spinelli G., Development. May 1, 1999; 126 (10): 2171-9.
Homeobox-containing gene transiently expressed in a spatially restricted pattern in the early sea urchin embryo., Di Bernardo M, Russo R, Oliveri P, Melfi R, Spinelli G., Proc Natl Acad Sci U S A. August 29, 1995; 92 (18): 8180-4.
Expression of homeobox-containing genes in the sea urchin (Parancentrotus lividus) embryo., Di Bernardo M, Russo R, Oliveri P, Melfi R, Spinelli G., Genetica. January 1, 1994; 94 (2-3): 141-50.

Functional Analyses of Four Cryptochromes From Aquatic Organisms After Heterologous Expression in Drosophila melanogaster Circadian Clock Cells., Chen C, Tamai TK, Xu M, Petrone L, Oliveri P, Whitmore D, Stanewsky R., J Biol Rhythms. March 28, 2024; 7487304241228617.

Molecular and Cellular Characterization of the TH Pathway in the Sea Urchin Strongylocentrotus purpuratus., Cocurullo M, Paganos P, Wood NJ, Arnone MI, Oliveri P., Cells. January 10, 2023; 12 (2):

Neurogenesis during Brittle Star Arm Regeneration Is Characterised by a Conserved Set of Key Developmental Genes., Czarkwiani A, Taylor J, Oliveri P., Biology (Basel). September 16, 2022; 11 (9):

The Development and Neuronal Complexity of Bipinnaria Larvae of the Sea Star Asterias rubens., Carter HF, Thompson JR, Elphick MR, Oliveri P., Integr Comp Biol. September 8, 2021; 61 (2): 337-351.

FGF signalling plays similar roles in development and regeneration of the skeleton in the brittle star Amphiura filiformis., Czarkwiani A, Dylus DV, Carballo L, Oliveri P., Development. May 15, 2021; 148 (10):

Post-metamorphic skeletal growth in the sea urchin Paracentrotus lividus and implications for body plan evolution., Thompson JR, Paganos P, Benvenuto G, Arnone MI, Oliveri P., Evodevo. March 16, 2021; 12 (1): 3.

Ultrastructural and molecular analysis of the origin and differentiation of cells mediating brittle star skeletal regeneration., Piovani L, Czarkwiani A, Ferrario C, Sugni M, Oliveri P., BMC Biol. January 18, 2021; 19 (1): 9.

Extracellular matrix gene expression during arm regeneration in Amphiura filiformis., Ferrario C, Czarkwiani A, Dylus DV, Piovani L, Candia Carnevali MD, Sugni M, Oliveri P., Cell Tissue Res. September 1, 2020; 381 (3): 411-426.

Unravelling the evolutionary history of kisspeptin., Arnone MI, Oliveri P., Elife. June 15, 2020; 9

Evolutionary transition between invertebrates and vertebrates via methylation reprogramming in embryogenesis., Xu X, Li G, Li C, Zhang J, Wang Q, Simmons DK, Chen X, Wijesena N, Zhu W, Wang Z, Wang Z, Ju B, Ci W, Lu X, Yu D, Wang QF, Aluru N, Oliveri P, Zhang YE, Martindale MQ, Liu J., Natl Sci Rev. October 1, 2019; 6 (5): 993-1003.

Developmental transcriptomics of the brittle star Amphiura filiformis reveals gene regulatory network rewiring in echinoderm larval skeleton evolution., Dylus DV, Czarkwiani A, Blowes LM, Elphick MR, Oliveri P., Genome Biol. February 28, 2018; 19 (1): 26.

Fundamental aspects of arm repair phase in two echinoderm models., Ferrario C, Ben Khadra Y, Czarkwiani A, Zakrzewski A, Martinez P, Colombo G, Bonasoro F, Candia Carnevali MD, Oliveri P, Sugni M., Dev Biol. January 15, 2018; 433 (2): 297-309.

Neuropeptidergic Systems in Pluteus Larvae of the Sea Urchin Strongylocentrotus purpuratus: Neurochemical Complexity in a "Simple" Nervous System., Wood NJ, Mattiello T, Rowe ML, Ward L, Perillo M, Arnone MI, Elphick MR, Oliveri P., Front Endocrinol (Lausanne). January 1, 2018; 9 628.

New Neuronal Subtypes With a "Pre-Pancreatic" Signature in the Sea Urchin Stongylocentrotus purpuratus., Perillo M, Paganos P, Mattiello T, Cocurullo M, Oliveri P, Arnone MI., Front Endocrinol (Lausanne). January 1, 2018; 9 650.

Large-scale gene expression study in the ophiuroid Amphiura filiformis provides insights into evolution of gene regulatory networks., Dylus DV, Czarkwiani A, Stångberg J, Ortega-Martinez O, Dupont S, Oliveri P., Evodevo. January 1, 2016; 7 2.

Skeletal regeneration in the brittle star Amphiura filiformis., Czarkwiani A, Ferrario C, Dylus DV, Sugni M, Oliveri P., Front Zool. January 1, 2016; 13 18.

Discovery of sea urchin NGFFFamide receptor unites a bilaterian neuropeptide family., Semmens DC, Beets I, Rowe ML, Blowes LM, Oliveri P, Elphick MR., Open Biol. April 1, 2015; 5 (4): 150030.

A cnidarian homologue of an insect gustatory receptor functions in developmental body patterning., Saina M, Busengdal H, Sinigaglia C, Petrone L, Oliveri P, Rentzsch F, Benton R., Nat Commun. February 18, 2015; 6 6243.

NAD kinase controls animal NADP biosynthesis and is modulated via evolutionarily divergent calmodulin-dependent mechanisms., Love NR, Pollak N, Dölle C, Niere M, Chen Y, Oliveri P, Amaya E, Patel S, Ziegler M., Proc Natl Acad Sci U S A. February 3, 2015; 112 (5): 1386-91.

Molecular characterization of the apical organ of the anthozoan Nematostella vectensis., Sinigaglia C, Busengdal H, Lerner A, Oliveri P, Rentzsch F., Dev Biol. February 1, 2015; 398 (1): 120-33.

Phylogenomic analysis of echinoderm class relationships supports Asterozoa., Telford MJ, Lowe CJ, Cameron CB, Ortega-Martinez O, Aronowicz J, Oliveri P, Copley RR., Proc Biol Sci. July 7, 2014; 281 (1786):

The Cryptochrome/Photolyase Family in aquatic organisms., Oliveri P, Fortunato AE, Petrone L, Ishikawa-Fujiwara T, Kobayashi Y, Todo T, Antonova O, Arboleda E, Zantke J, Tessmar-Raible K, Falciatore A., Mar Genomics. April 1, 2014; 14 23-37.

Myogenesis in the sea urchin embryo: the molecular fingerprint of the myoblast precursors., Andrikou C, Iovene E, Rizzo F, Oliveri P, Arnone MI., Evodevo. December 2, 2013; 4 (1): 33.

Expression of skeletogenic genes during arm regeneration in the brittle star Amphiura filiformis., Czarkwiani A, Dylus DV, Oliveri P., Gene Expr Patterns. December 1, 2013; 13 (8): 464-72.

An ancient role for Gata-1/2/3 and Scl transcription factor homologs in the development of immunocytes., Solek CM, Oliveri P, Loza-Coll M, Schrankel CS, Ho EC, Wang G, Rast JP., Dev Biol. October 1, 2013; 382 (1): 280-92.

The cis-regulatory system of the tbrain gene: Alternative use of multiple modules to promote skeletogenic expression in the sea urchin embryo., Wahl ME, Hahn J, Gora K, Davidson EH, Oliveri P., Dev Biol. November 15, 2009; 335 (2): 428-41.

Global regulatory logic for specification of an embryonic cell lineage., Oliveri P, Tu Q, Davidson EH., Proc Natl Acad Sci U S A. April 22, 2008; 105 (16): 5955-62.

Vasa protein expression is restricted to the small micromeres of the sea urchin, but is inducible in other lineages early in development., Voronina E, Lopez M, Juliano CE, Gustafson E, Song JL, Extavour C, George S, Oliveri P, McClay D, Wessel G., Dev Biol. February 15, 2008; 314 (2): 276-86.

A protocol for unraveling gene regulatory networks., Materna SC, Oliveri P., Nat Protoc. January 1, 2008; 3 (12): 1876-87.

A missing link in the sea urchin embryo gene regulatory network: hesC and the double-negative specification of micromeres., Revilla-i-Domingo R, Oliveri P, Davidson EH., Proc Natl Acad Sci U S A. July 24, 2007; 104 (30): 12383-8.

Sea urchin Forkhead gene family: phylogeny and embryonic expression., Tu Q, Brown CT, Davidson EH, Oliveri P., Dev Biol. December 1, 2006; 300 (1): 49-62.

High regulatory gene use in sea urchin embryogenesis: Implications for bilaterian development and evolution., Howard-Ashby M, Materna SC, Brown CT, Tu Q, Oliveri P, Cameron RA, Davidson EH., Dev Biol. December 1, 2006; 300 (1): 27-34.

The genome of the sea urchin Strongylocentrotus purpuratus., Sea Urchin Genome Sequencing Consortium, Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, Foltz KR, Hamdoun A, Hynes RO, Klein WH, Marzluff W, McClay DR, Morris RL, Mushegian A, Rast JP, Smith LC, Thorndyke MC, Vacquier VD, Wessel GM, Wray G, Zhang L, Elsik CG, Ermolaeva O, Hlavina W, Hofmann G, Kitts P, Landrum MJ, Mackey AJ, Maglott D, Panopoulou G, Poustka AJ, Pruitt K, Sapojnikov V, Song X, Souvorov A, Solovyev V, Wei Z, Whittaker CA, Worley K, Durbin KJ, Shen Y, Fedrigo O, Garfield D, Haygood R, Primus A, Satija R, Severson T, Gonzalez-Garay ML, Jackson AR, Milosavljevic A, Tong M, Killian CE, Livingston BT, Wilt FH, Adams N, Bellé R, Carbonneau S, Cheung R, Cormier P, Cosson B, Croce J, Fernandez-Guerra A, Genevière AM, Goel M, Kelkar H, Morales J, Mulner-Lorillon O, Robertson AJ, Goldstone JV, Cole B, Epel D, Gold B, Hahn ME, Howard-Ashby M, Scally M, Stegeman JJ, Allgood EL, Cool J, Judkins KM, McCafferty SS, Musante AM, Obar RA, Rawson AP, Rossetti BJ, Gibbons IR, Hoffman MP, Leone A, Istrail S, Materna SC, Samanta MP, Stolc V, Tongprasit W, Tu Q, Bergeron KF, Brandhorst BP, Whittle J, Berney K, Bottjer DJ, Calestani C, Peterson K, Chow E, Yuan QA, Elhaik E, Graur D, Reese JT, Bosdet I, Heesun S, Marra MA, Schein J, Anderson MK, Brockton V, Buckley KM, Cohen AH, Fugmann SD, Hibino T, Loza-Coll M, Majeske AJ, Messier C, Nair SV, Pancer Z, Terwilliger DP, Agca C, Arboleda E, Chen N, Churcher AM, Hallböök F, Humphrey GW, Idris MM, Kiyama T, Liang S, Mellott D, Mu X, Murray G, Olinski RP, Raible F, Rowe M, Taylor JS, Tessmar-Raible K, Wang D, Wilson KH, Yaguchi S, Gaasterland T, Galindo BE, Gunaratne HJ, Juliano C, Kinukawa M, Moy GW, Neill AT, Nomura M, Raisch M, Reade A, Roux MM, Song JL, Su YH, Townley IK, Voronina E, Wong JL, Amore G, Branno M, Brown ER, Cavalieri V, Duboc V, Duloquin L, Flytzanis C, Gache C, Lapraz F, Lepage T, Locascio A, Martinez P, Matassi G, Matranga V, Range R, Rizzo F, Röttinger E, Beane W, Bradham C, Byrum C, Glenn T, Hussain S, Manning G, Miranda E, Thomason R, Walton K, Wikramanayke A, Wu SY, Xu R, Brown CT, Chen L, Gray RF, Lee PY, Nam J, Oliveri P, Smith J, Muzny D, Bell S, Chacko J, Cree A, Curry S, Davis C, Dinh H, Dugan-Rocha S, Fowler J, Gill R, Hamilton C, Hernandez J, Hines S, Hume J, Jackson L, Jolivet A, Kovar C, Lee S, Lewis L, Miner G, Morgan M, Nazareth LV, Okwuonu G, Parker D, Pu LL, Thorn R, Wright R., Science. November 10, 2006; 314 (5801): 941-52.

Repression of mesodermal fate by foxa, a key endoderm regulator of the sea urchin embryo., Oliveri P, Walton KD, Davidson EH, McClay DR., Development. November 1, 2006; 133 (21): 4173-81.

Gene regulatory network controlling embryonic specification in the sea urchin., Oliveri P, Davidson EH., Curr Opin Genet Dev. August 1, 2004; 14 (4): 351-60.

Expression of an NK2 homeodomain gene in the apical ectoderm defines a new territory in the early sea urchin embryo., Takacs CM, Amore G, Oliveri P, Poustka AJ, Wang D, Burke RD, Peterson KJ., Dev Biol. May 1, 2004; 269 (1): 152-64.

cis-Regulatory activity of randomly chosen genomic fragments from the sea urchin., Cameron RA, Oliveri P, Wyllie J, Davidson EH., Gene Expr Patterns. March 1, 2004; 4 (2): 205-13.

Gene regulatory network analysis in sea urchin embryos., Oliveri P, Davidson EH., Methods Cell Biol. January 1, 2004; 74 775-94.

Alx1, a member of the Cart1/Alx3/Alx4 subfamily of Paired-class homeodomain proteins, is an essential component of the gene network controlling skeletogenic fate specification in the sea urchin embryo., Ettensohn CA, Illies MR, Oliveri P, De Jong DL., Development. July 1, 2003; 130 (13): 2917-28.

Activation of pmar1 controls specification of micromeres in the sea urchin embryo., Oliveri P, Davidson EH, McClay DR., Dev Biol. June 1, 2003; 258 (1): 32-43.

Quantitative imaging of cis-regulatory reporters in living embryos., Dmochowski IJ, Dmochowski JE, Oliveri P, Davidson EH, Fraser SE., Proc Natl Acad Sci U S A. October 1, 2002; 99 (20): 12895-900.

A provisional regulatory gene network for specification of endomesoderm in the sea urchin embryo., Davidson EH, Rast JP, Oliveri P, Ransick A, Calestani C, Yuh CH, Minokawa T, Amore G, Hinman V, Arenas-Mena C, Otim O, Brown CT, Livi CB, Lee PY, Revilla R, Schilstra MJ, Clarke PJ, Rust AG, Pan Z, Arnone MI, Rowen L, Cameron RA, McClay DR, Hood L, Bolouri H., Dev Biol. June 1, 2002; 246 (1): 162-90.

A regulatory gene network that directs micromere specification in the sea urchin embryo., Oliveri P, Carrick DM, Davidson EH., Dev Biol. June 1, 2002; 246 (1): 209-28.

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