Brian Livingston - Publications

Publications (26)

ECB-PERS-4067

Publications By Brian Livingston

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Derivedness Index for Estimating Degree of Phenotypic Evolution of Embryos: A Study of Comparative Transcriptomic Analyses of Chordates and Echinoderms., Leong JCK, Li Y, Uesaka M, Uchida Y, Omori A, Hao M, Wan W, Dong Y, Ren Y, Zhang S, Zeng T, Wang F, Chen L, Wessel G, Livingston BT, Bradham C, Wang W, Irie N., Front Cell Dev Biol. January 1, 2021; 9 749963.
Genomic insights of body plan transitions from bilateral to pentameral symmetry in Echinoderms., Li Y, Omori A, Flores RL, Satterfield S, Nguyen C, Ota T, Tsurugaya T, Ikuta T, Ikeo K, Kikuchi M, Leong JCK, Reich A, Hao M, Wan W, Dong Y, Ren Y, Zhang S, Zeng T, Uesaka M, Uchida Y, Li X, Shibata TF, Bino T, Ogawa K, Shigenobu S, Kondo M, Wang F, Chen L, Wessel G, Saiga H, Cameron RA, Livingston B, Bradham C, Wang W, Irie N., Commun Biol. July 10, 2020; 3 (1): 371.
The skeletal proteome of the sea star Patiria miniata and evolution of biomineralization in echinoderms., Flores RL, Livingston BT., BMC Evol Biol. June 5, 2017; 17 (1): 125.
Examination of the skeletal proteome of the brittle star Ophiocoma wendtii reveals overall conservation of proteins but variation in spicule matrix proteins., Seaver RW, Livingston BT., Proteome Sci. February 7, 2015; 13 7.
Sequencing and analysis of the gastrula transcriptome of the brittle star Ophiocoma wendtii., Vaughn R, Garnhart N, Garey JR, Thomas WK, Livingston BT., Evodevo. September 3, 2012; 3 (1): 19.
Tracing misalignment and unequal crossing over during evolution of the repetitive region of the SM50 gene in sea urchins., Hussain S, Livingston BT., J Exp Zool A Ecol Genet Physiol. March 1, 2009; 311 (3): 143-54.
A genome-wide analysis of biomineralization-related proteins in the sea urchin Strongylocentrotus purpuratus., Livingston BT, Killian CE, Wilt F, Cameron A, Landrum MJ, Ermolaeva O, Sapojnikov V, Maglott DR, Buchanan AM, Ettensohn CA., Dev Biol. December 1, 2006; 300 (1): 335-48.
Sea urchin metalloproteases: a genomic survey of the BMP-1/tolloid-like, MMP and ADAM families., Angerer L, Hussain S, Wei Z, Livingston BT., Dev Biol. December 1, 2006; 300 (1): 267-81.
The genome of the sea urchin Strongylocentrotus purpuratus., Sea Urchin Genome Sequencing Consortium, Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, Foltz KR, Hamdoun A, Hynes RO, Klein WH, Marzluff W, McClay DR, Morris RL, Mushegian A, Rast JP, Smith LC, Thorndyke MC, Vacquier VD, Wessel GM, Wray G, Zhang L, Elsik CG, Ermolaeva O, Hlavina W, Hofmann G, Kitts P, Landrum MJ, Mackey AJ, Maglott D, Panopoulou G, Poustka AJ, Pruitt K, Sapojnikov V, Song X, Souvorov A, Solovyev V, Wei Z, Whittaker CA, Worley K, Durbin KJ, Shen Y, Fedrigo O, Garfield D, Haygood R, Primus A, Satija R, Severson T, Gonzalez-Garay ML, Jackson AR, Milosavljevic A, Tong M, Killian CE, Livingston BT, Wilt FH, Adams N, Bellé R, Carbonneau S, Cheung R, Cormier P, Cosson B, Croce J, Fernandez-Guerra A, Genevière AM, Goel M, Kelkar H, Morales J, Mulner-Lorillon O, Robertson AJ, Goldstone JV, Cole B, Epel D, Gold B, Hahn ME, Howard-Ashby M, Scally M, Stegeman JJ, Allgood EL, Cool J, Judkins KM, McCafferty SS, Musante AM, Obar RA, Rawson AP, Rossetti BJ, Gibbons IR, Hoffman MP, Leone A, Istrail S, Materna SC, Samanta MP, Stolc V, Tongprasit W, Tu Q, Bergeron KF, Brandhorst BP, Whittle J, Berney K, Bottjer DJ, Calestani C, Peterson K, Chow E, Yuan QA, Elhaik E, Graur D, Reese JT, Bosdet I, Heesun S, Marra MA, Schein J, Anderson MK, Brockton V, Buckley KM, Cohen AH, Fugmann SD, Hibino T, Loza-Coll M, Majeske AJ, Messier C, Nair SV, Pancer Z, Terwilliger DP, Agca C, Arboleda E, Chen N, Churcher AM, Hallböök F, Humphrey GW, Idris MM, Kiyama T, Liang S, Mellott D, Mu X, Murray G, Olinski RP, Raible F, Rowe M, Taylor JS, Tessmar-Raible K, Wang D, Wilson KH, Yaguchi S, Gaasterland T, Galindo BE, Gunaratne HJ, Juliano C, Kinukawa M, Moy GW, Neill AT, Nomura M, Raisch M, Reade A, Roux MM, Song JL, Su YH, Townley IK, Voronina E, Wong JL, Amore G, Branno M, Brown ER, Cavalieri V, Duboc V, Duloquin L, Flytzanis C, Gache C, Lapraz F, Lepage T, Locascio A, Martinez P, Matassi G, Matranga V, Range R, Rizzo F, Röttinger E, Beane W, Bradham C, Byrum C, Glenn T, Hussain S, Manning G, Miranda E, Thomason R, Walton K, Wikramanayke A, Wu SY, Xu R, Brown CT, Chen L, Gray RF, Lee PY, Nam J, Oliveri P, Smith J, Muzny D, Bell S, Chacko J, Cree A, Curry S, Davis C, Dinh H, Dugan-Rocha S, Fowler J, Gill R, Hamilton C, Hernandez J, Hines S, Hume J, Jackson L, Jolivet A, Kovar C, Lee S, Lewis L, Miner G, Morgan M, Nazareth LV, Okwuonu G, Parker D, Pu LL, Thorn R, Wright R., Science. November 10, 2006; 314 (5801): 941-52.
Overexpression and mechanistic characterization of blastula protease 10, a metalloprotease involved in sea urchin embryogenesis and development., da Silva GF, Reuille RL, Ming LJ, Livingston BT., J Biol Chem. April 21, 2006; 281 (16): 10737-44.
Identification of cis-regulatory elements involved in transcriptional regulation of the sea urchin SpFoxB gene., Fung ES, Thurm C, Reuille R, Brede B, Livingston BT., Dev Growth Differ. September 1, 2005; 47 (7): 461-70.
Special evolutionary properties of genes encoding a protein with a simple amino acid repeat., Meeds T, Lockard E, Livingston BT., J Mol Evol. September 1, 2001; 53 (3): 180-90.
A sea urchin genome project: sequence scan, virtual map, and additional resources., Cameron RA, Mahairas G, Rast JP, Martinez P, Biondi TR, Swartzell S, Wallace JC, Poustka AJ, Livingston BT, Wray GA, Ettensohn CA, Lehrach H, Britten RJ, Davidson EH, Hood L., Proc Natl Acad Sci U S A. August 15, 2000; 97 (17): 9514-8.
Conservation of the WD-repeat, microtubule-binding protein, EMAP, in sea urchins, humans, and the nematode C. elegans., Suprenant KA, Tuxhorn JA, Daggett MA, Ahrens DP, Hostetler A, Palange JM, VanWinkle CE, Livingston BT., Dev Genes Evol. January 1, 2000; 210 (1): 2-10.
Gene expression in the endoderm during sea urchin development., Livingston B, David ES, Thurm C., Zygote. January 1, 2000; 8 Suppl 1 S35-6.
Characterization of a gene encoding a developmentally regulated winged helix transcription factor of the sea urchin Strongylocentrotus purpuratus., David ES, Luke NH, Livingston BT., Gene. August 5, 1999; 236 (1): 97-105.
Protein tyrosine kinase activity following fertilization is required to complete gastrulation, but not for initial differentiation of endoderm and mesoderm in the sea urchin embryo., Livingston BT, VanWinkle CE, Kinsey WH., Dev Biol. January 1, 1998; 193 (1): 90-9.
Spfkh1 encodes a transcription factor implicated in gut formation during sea urchin development., Luke NH, Killian CE, Livingston BT., Dev Growth Differ. June 1, 1997; 39 (3): 285-94.
Injection of myo-inositol reverses the effects of lithium on sea urchin blastomeres., Livingston BT, Wilt FH., Dev Growth Differ. October 1, 1995; 37 (5): 539-543.
Cell interactions in invertebrate development., Livingston BT, Wilt F., Curr Opin Cell Biol. October 1, 1993; 5 (5): 839-43.
Phorbol esters alter cell fate during development of sea urchin embryos., Livingston BT, Wilt FH., J Cell Biol. December 1, 1992; 119 (6): 1641-8.
Characterization of a cDNA encoding a protein involved in formation of the skeleton during development of the sea urchin Lytechinus pictus., Livingston BT, Shaw R, Bailey A, Wilt F., Dev Biol. December 1, 1991; 148 (2): 473-80.
The corrected structure of the SM50 spicule matrix protein of Strongylocentrotus purpuratus., Katoh-Fukui Y, Noce T, Ueda T, Fujiwara Y, Hashimoto N, Higashinakagawa T, Killian CE, Livingston BT, Wilt FH, Benson SC., Dev Biol. May 1, 1991; 145 (1): 201-2.
Range and stability of cell fate determination in isolated sea urchin blastomeres., Livingston BT, Wilt FH., Development. March 1, 1990; 108 (3): 403-10.
Determination of cell fate in sea urchin embryos., Livingston BT, Wilt FH., Bioessays. March 1, 1990; 12 (3): 115-9.
Lithium evokes expression of vegetal-specific molecules in the animal blastomeres of sea urchin embryos., Livingston BT, Wilt FH., Proc Natl Acad Sci U S A. May 1, 1989; 86 (10): 3669-73.

Derivedness Index for Estimating Degree of Phenotypic Evolution of Embryos: A Study of Comparative Transcriptomic Analyses of Chordates and Echinoderms., Leong JCK, Li Y, Uesaka M, Uchida Y, Omori A, Hao M, Wan W, Dong Y, Ren Y, Zhang S, Zeng T, Wang F, Chen L, Wessel G, Livingston BT, Bradham C, Wang W, Irie N., Front Cell Dev Biol. January 1, 2021; 9 749963.

Genomic insights of body plan transitions from bilateral to pentameral symmetry in Echinoderms., Li Y, Omori A, Flores RL, Satterfield S, Nguyen C, Ota T, Tsurugaya T, Ikuta T, Ikeo K, Kikuchi M, Leong JCK, Reich A, Hao M, Wan W, Dong Y, Ren Y, Zhang S, Zeng T, Uesaka M, Uchida Y, Li X, Shibata TF, Bino T, Ogawa K, Shigenobu S, Kondo M, Wang F, Chen L, Wessel G, Saiga H, Cameron RA, Livingston B, Bradham C, Wang W, Irie N., Commun Biol. July 10, 2020; 3 (1): 371.

The skeletal proteome of the sea star Patiria miniata and evolution of biomineralization in echinoderms., Flores RL, Livingston BT., BMC Evol Biol. June 5, 2017; 17 (1): 125.

Examination of the skeletal proteome of the brittle star Ophiocoma wendtii reveals overall conservation of proteins but variation in spicule matrix proteins., Seaver RW, Livingston BT., Proteome Sci. February 7, 2015; 13 7.

Sequencing and analysis of the gastrula transcriptome of the brittle star Ophiocoma wendtii., Vaughn R, Garnhart N, Garey JR, Thomas WK, Livingston BT., Evodevo. September 3, 2012; 3 (1): 19.

Tracing misalignment and unequal crossing over during evolution of the repetitive region of the SM50 gene in sea urchins., Hussain S, Livingston BT., J Exp Zool A Ecol Genet Physiol. March 1, 2009; 311 (3): 143-54.

A genome-wide analysis of biomineralization-related proteins in the sea urchin Strongylocentrotus purpuratus., Livingston BT, Killian CE, Wilt F, Cameron A, Landrum MJ, Ermolaeva O, Sapojnikov V, Maglott DR, Buchanan AM, Ettensohn CA., Dev Biol. December 1, 2006; 300 (1): 335-48.

Sea urchin metalloproteases: a genomic survey of the BMP-1/tolloid-like, MMP and ADAM families., Angerer L, Hussain S, Wei Z, Livingston BT., Dev Biol. December 1, 2006; 300 (1): 267-81.

The genome of the sea urchin Strongylocentrotus purpuratus., Sea Urchin Genome Sequencing Consortium, Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, Foltz KR, Hamdoun A, Hynes RO, Klein WH, Marzluff W, McClay DR, Morris RL, Mushegian A, Rast JP, Smith LC, Thorndyke MC, Vacquier VD, Wessel GM, Wray G, Zhang L, Elsik CG, Ermolaeva O, Hlavina W, Hofmann G, Kitts P, Landrum MJ, Mackey AJ, Maglott D, Panopoulou G, Poustka AJ, Pruitt K, Sapojnikov V, Song X, Souvorov A, Solovyev V, Wei Z, Whittaker CA, Worley K, Durbin KJ, Shen Y, Fedrigo O, Garfield D, Haygood R, Primus A, Satija R, Severson T, Gonzalez-Garay ML, Jackson AR, Milosavljevic A, Tong M, Killian CE, Livingston BT, Wilt FH, Adams N, Bellé R, Carbonneau S, Cheung R, Cormier P, Cosson B, Croce J, Fernandez-Guerra A, Genevière AM, Goel M, Kelkar H, Morales J, Mulner-Lorillon O, Robertson AJ, Goldstone JV, Cole B, Epel D, Gold B, Hahn ME, Howard-Ashby M, Scally M, Stegeman JJ, Allgood EL, Cool J, Judkins KM, McCafferty SS, Musante AM, Obar RA, Rawson AP, Rossetti BJ, Gibbons IR, Hoffman MP, Leone A, Istrail S, Materna SC, Samanta MP, Stolc V, Tongprasit W, Tu Q, Bergeron KF, Brandhorst BP, Whittle J, Berney K, Bottjer DJ, Calestani C, Peterson K, Chow E, Yuan QA, Elhaik E, Graur D, Reese JT, Bosdet I, Heesun S, Marra MA, Schein J, Anderson MK, Brockton V, Buckley KM, Cohen AH, Fugmann SD, Hibino T, Loza-Coll M, Majeske AJ, Messier C, Nair SV, Pancer Z, Terwilliger DP, Agca C, Arboleda E, Chen N, Churcher AM, Hallböök F, Humphrey GW, Idris MM, Kiyama T, Liang S, Mellott D, Mu X, Murray G, Olinski RP, Raible F, Rowe M, Taylor JS, Tessmar-Raible K, Wang D, Wilson KH, Yaguchi S, Gaasterland T, Galindo BE, Gunaratne HJ, Juliano C, Kinukawa M, Moy GW, Neill AT, Nomura M, Raisch M, Reade A, Roux MM, Song JL, Su YH, Townley IK, Voronina E, Wong JL, Amore G, Branno M, Brown ER, Cavalieri V, Duboc V, Duloquin L, Flytzanis C, Gache C, Lapraz F, Lepage T, Locascio A, Martinez P, Matassi G, Matranga V, Range R, Rizzo F, Röttinger E, Beane W, Bradham C, Byrum C, Glenn T, Hussain S, Manning G, Miranda E, Thomason R, Walton K, Wikramanayke A, Wu SY, Xu R, Brown CT, Chen L, Gray RF, Lee PY, Nam J, Oliveri P, Smith J, Muzny D, Bell S, Chacko J, Cree A, Curry S, Davis C, Dinh H, Dugan-Rocha S, Fowler J, Gill R, Hamilton C, Hernandez J, Hines S, Hume J, Jackson L, Jolivet A, Kovar C, Lee S, Lewis L, Miner G, Morgan M, Nazareth LV, Okwuonu G, Parker D, Pu LL, Thorn R, Wright R., Science. November 10, 2006; 314 (5801): 941-52.

Overexpression and mechanistic characterization of blastula protease 10, a metalloprotease involved in sea urchin embryogenesis and development., da Silva GF, Reuille RL, Ming LJ, Livingston BT., J Biol Chem. April 21, 2006; 281 (16): 10737-44.

Identification of cis-regulatory elements involved in transcriptional regulation of the sea urchin SpFoxB gene., Fung ES, Thurm C, Reuille R, Brede B, Livingston BT., Dev Growth Differ. September 1, 2005; 47 (7): 461-70.

Special evolutionary properties of genes encoding a protein with a simple amino acid repeat., Meeds T, Lockard E, Livingston BT., J Mol Evol. September 1, 2001; 53 (3): 180-90.

A sea urchin genome project: sequence scan, virtual map, and additional resources., Cameron RA, Mahairas G, Rast JP, Martinez P, Biondi TR, Swartzell S, Wallace JC, Poustka AJ, Livingston BT, Wray GA, Ettensohn CA, Lehrach H, Britten RJ, Davidson EH, Hood L., Proc Natl Acad Sci U S A. August 15, 2000; 97 (17): 9514-8.

Conservation of the WD-repeat, microtubule-binding protein, EMAP, in sea urchins, humans, and the nematode C. elegans., Suprenant KA, Tuxhorn JA, Daggett MA, Ahrens DP, Hostetler A, Palange JM, VanWinkle CE, Livingston BT., Dev Genes Evol. January 1, 2000; 210 (1): 2-10.

Gene expression in the endoderm during sea urchin development., Livingston B, David ES, Thurm C., Zygote. January 1, 2000; 8 Suppl 1 S35-6.

Characterization of a gene encoding a developmentally regulated winged helix transcription factor of the sea urchin Strongylocentrotus purpuratus., David ES, Luke NH, Livingston BT., Gene. August 5, 1999; 236 (1): 97-105.

Protein tyrosine kinase activity following fertilization is required to complete gastrulation, but not for initial differentiation of endoderm and mesoderm in the sea urchin embryo., Livingston BT, VanWinkle CE, Kinsey WH., Dev Biol. January 1, 1998; 193 (1): 90-9.

Spfkh1 encodes a transcription factor implicated in gut formation during sea urchin development., Luke NH, Killian CE, Livingston BT., Dev Growth Differ. June 1, 1997; 39 (3): 285-94.

Injection of myo-inositol reverses the effects of lithium on sea urchin blastomeres., Livingston BT, Wilt FH., Dev Growth Differ. October 1, 1995; 37 (5): 539-543.

Cell interactions in invertebrate development., Livingston BT, Wilt F., Curr Opin Cell Biol. October 1, 1993; 5 (5): 839-43.

Phorbol esters alter cell fate during development of sea urchin embryos., Livingston BT, Wilt FH., J Cell Biol. December 1, 1992; 119 (6): 1641-8.

Characterization of a cDNA encoding a protein involved in formation of the skeleton during development of the sea urchin Lytechinus pictus., Livingston BT, Shaw R, Bailey A, Wilt F., Dev Biol. December 1, 1991; 148 (2): 473-80.

The corrected structure of the SM50 spicule matrix protein of Strongylocentrotus purpuratus., Katoh-Fukui Y, Noce T, Ueda T, Fujiwara Y, Hashimoto N, Higashinakagawa T, Killian CE, Livingston BT, Wilt FH, Benson SC., Dev Biol. May 1, 1991; 145 (1): 201-2.

Range and stability of cell fate determination in isolated sea urchin blastomeres., Livingston BT, Wilt FH., Development. March 1, 1990; 108 (3): 403-10.

Determination of cell fate in sea urchin embryos., Livingston BT, Wilt FH., Bioessays. March 1, 1990; 12 (3): 115-9.

Lithium evokes expression of vegetal-specific molecules in the animal blastomeres of sea urchin embryos., Livingston BT, Wilt FH., Proc Natl Acad Sci U S A. May 1, 1989; 86 (10): 3669-73.

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