Amro Hamdoun - Publications

Publications (35)

ECB-PERS-4063

Publications By Amro Hamdoun

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Local and global changes in cell density induce reorganisation of 3D packing in a proliferating epithelium., Barone V, Tagua A, Román JÁA, Hamdoun A, Garrido-García J, Lyons DC, Escudero LM., Development. April 15, 2024;
Cold storage and cryopreservation methods for spermatozoa of the sea urchins Lytechinus pictus and Strongylocentrotus purpuratus., Vacquier VD, Hamdoun A., Dev Dyn. February 10, 2024;
Solute carrier (SLC) expression reveals skeletogenic cell diversity., Lee Y, Tjeerdema E, Kling S, Chang N, Hamdoun A., Dev Biol. November 1, 2023; 503 68-82.
Generation of a homozygous mutant drug transporter (ABCB1) knockout line in the sea urchin Lytechinus pictus., Vyas H, Schrankel CS, Espinoza JA, Mitchell KL, Nesbit KT, Jackson E, Chang N, Lee Y, Warner J, Reitzel A, Lyons DC, Hamdoun A., Development. June 1, 2022; 149 (11):
New techniques for creating parthenogenetic larvae of the sea urchin Lytechinus pictus for gene expression studies., Vacquier VD, Hamdoun A., Dev Dyn. December 1, 2021; 250 (12): 1828-1833.
Chromosomal-Level Genome Assembly of the Painted Sea Urchin Lytechinus pictus: A Genetically Enabled Model System for Cell Biology and Embryonic Development., Warner JF, Lord JW, Schreiter SA, Nesbit KT, Hamdoun A, Lyons DC., Genome Biol Evol. April 5, 2021; 13 (4):
CRISPR/Cas9 mutagenesis reveals a role for ABCB1 in gut immune responses to Vibrio diazotrophicus in sea urchin larvae., Fleming TJ, Schrankel CS, Vyas H, Rosenblatt HD, Hamdoun A., J Exp Biol. April 1, 2021; 224 (7):
CRISPR/Cas9 mutagenesis reveals a role for ABCB1 in gut immune responses to Vibrio diazotrophicus in sea urchin larvae., Fleming TJ, Schrankel CS, Vyas H, Rosenblatt HD, Hamdoun A., J Exp Biol. April 1, 2021; 224 (7):
Early patterning of ABCB, ABCC, and ABCG transporters establishes unique territories of small molecule transport in embryonic mesoderm and endoderm., Schrankel CS, Hamdoun A., Dev Biol. April 1, 2021; 472 115-124.
Embryo, larval, and juvenile staging of Lytechinus pictus from fertilization through sexual maturation., Nesbit KT, Hamdoun A., Dev Dyn. November 1, 2020; 249 (11): 1334-1346.
Inhibitory effects of neurotoxin β-N-methylamino-L-alanine on fertilization and early development of the sea urchin Lytechinus pictus., Li A, Espinoza J, Hamdoun A., Aquat Toxicol. April 1, 2020; 221 105425.
The painted sea urchin, Lytechinus pictus, as a genetically-enabled developmental model., Nesbit KT, Fleming T, Batzel G, Pouv A, Rosenblatt HD, Pace DA, Hamdoun A, Lyons DC., Methods Cell Biol. January 1, 2019; 150 105-123.
Methods to label, isolate, and image sea urchin small micromeres, the primordial germ cells (PGCs)., Campanale JP, Hamdoun A, Wessel GM, Su YH, Oulhen N., Methods Cell Biol. January 1, 2019; 150 269-292.
A teaching laboratory on the activation of xenobiotic transporters at fertilization of sea urchins., Shipp LE, Hill RZ, Hamdoun A., Methods Cell Biol. January 1, 2019; 150 429-447.
Generation, expression and utilization of single-domain antibodies for in vivo protein localization and manipulation in sea urchin embryos., Schrankel CS, Gökirmak T, Lee CW, Chang G, Hamdoun A., Methods Cell Biol. January 1, 2019; 151 353-376.
A vesicular Na+/Ca2+ exchanger in coral calcifying cells., Barron ME, Thies AB, Espinoza JA, Barott KL, Hamdoun A, Tresguerres M., PLoS One. January 1, 2018; 13 (10): e0205367.
Functional diversification of sea urchin ABCC1 (MRP1) by alternative splicing., Gökirmak T, Campanale JP, Reitzel AM, Shipp LE, Moy GW, Hamdoun A., Am J Physiol Cell Physiol. June 1, 2016; 310 (11): C911-20.
ADP-ribosyl cyclases regulate early development of the sea urchin., Ramakrishnan L, Uhlinger K, Dale L, Hamdoun A, Patel S., Messenger (Los Angel). June 1, 2016; 5 (1-2): 100-106.
ABCC5 is required for cAMP-mediated hindgut invagination in sea urchin embryos., Shipp LE, Hill RZ, Moy GW, Gökırmak T, Hamdoun A., Development. October 15, 2015; 142 (20): 3537-48.
Transport in technicolor: mapping ATP-binding cassette transporters in sea urchin embryos., Gökirmak T, Shipp LE, Campanale JP, Nicklisch SC, Hamdoun A., Mol Reprod Dev. September 1, 2014; 81 (9): 778-93.
Deadenylase depletion protects inherited mRNAs in primordial germ cells., Swartz SZ, Reich AM, Oulhen N, Raz T, Milos PM, Campanale JP, Hamdoun A, Wessel GM., Development. August 1, 2014; 141 (16): 3134-42.
Migration of sea urchin primordial germ cells., Campanale JP, Gökirmak T, Espinoza JA, Oulhen N, Wessel GM, Hamdoun A., Dev Dyn. July 1, 2014; 243 (7): 917-27.
Cost, effectiveness and environmental relevance of multidrug transporters in sea urchin embryos., Cole BJ, Hamdoun A, Epel D., J Exp Biol. October 15, 2013; 216 (Pt 20): 3896-905.
Localization and substrate selectivity of sea urchin multidrug (MDR) efflux transporters., Gökirmak T, Campanale JP, Shipp LE, Moy GW, Tao H, Hamdoun A., J Biol Chem. December 21, 2012; 287 (52): 43876-83.
Actin polymerization controls the activation of multidrug efflux at fertilization by translocation and fine-scale positioning of ABCB1 on microvilli., Whalen K, Reitzel AM, Hamdoun A., Mol Biol Cell. September 1, 2012; 23 (18): 3663-72.
ATP-binding cassette (ABC) transporter expression and localization in sea urchin development., Shipp LE, Hamdoun A., Dev Dyn. June 1, 2012; 241 (6): 1111-24.
Programmed reduction of ABC transporter activity in sea urchin germline progenitors., Campanale JP, Hamdoun A., Development. February 1, 2012; 139 (4): 783-92.
Multidrug efflux transporters limit accumulation of inorganic, but not organic, mercury in sea urchin embryos., Bosnjak I, Uhlinger KR, Heim W, Smital T, Franekić-Colić J, Coale K, Epel D, Hamdoun A., Environ Sci Technol. November 1, 2009; 43 (21): 8374-80.
The chemical defensome: environmental sensing and response genes in the Strongylocentrotus purpuratus genome., Goldstone JV, Hamdoun A, Cole BJ, Howard-Ashby M, Nebert DW, Scally M, Dean M, Epel D, Hahn ME, Stegeman JJ., Dev Biol. December 1, 2006; 300 (1): 366-84.
Increase in multidrug transport activity is associated with oocyte maturation in sea stars., Roepke TA, Hamdoun AM, Cherr GN., Dev Growth Differ. December 1, 2006; 48 (9): 559-73.
The genome of the sea urchin Strongylocentrotus purpuratus., Sea Urchin Genome Sequencing Consortium, Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, Foltz KR, Hamdoun A, Hynes RO, Klein WH, Marzluff W, McClay DR, Morris RL, Mushegian A, Rast JP, Smith LC, Thorndyke MC, Vacquier VD, Wessel GM, Wray G, Zhang L, Elsik CG, Ermolaeva O, Hlavina W, Hofmann G, Kitts P, Landrum MJ, Mackey AJ, Maglott D, Panopoulou G, Poustka AJ, Pruitt K, Sapojnikov V, Song X, Souvorov A, Solovyev V, Wei Z, Whittaker CA, Worley K, Durbin KJ, Shen Y, Fedrigo O, Garfield D, Haygood R, Primus A, Satija R, Severson T, Gonzalez-Garay ML, Jackson AR, Milosavljevic A, Tong M, Killian CE, Livingston BT, Wilt FH, Adams N, Bellé R, Carbonneau S, Cheung R, Cormier P, Cosson B, Croce J, Fernandez-Guerra A, Genevière AM, Goel M, Kelkar H, Morales J, Mulner-Lorillon O, Robertson AJ, Goldstone JV, Cole B, Epel D, Gold B, Hahn ME, Howard-Ashby M, Scally M, Stegeman JJ, Allgood EL, Cool J, Judkins KM, McCafferty SS, Musante AM, Obar RA, Rawson AP, Rossetti BJ, Gibbons IR, Hoffman MP, Leone A, Istrail S, Materna SC, Samanta MP, Stolc V, Tongprasit W, Tu Q, Bergeron KF, Brandhorst BP, Whittle J, Berney K, Bottjer DJ, Calestani C, Peterson K, Chow E, Yuan QA, Elhaik E, Graur D, Reese JT, Bosdet I, Heesun S, Marra MA, Schein J, Anderson MK, Brockton V, Buckley KM, Cohen AH, Fugmann SD, Hibino T, Loza-Coll M, Majeske AJ, Messier C, Nair SV, Pancer Z, Terwilliger DP, Agca C, Arboleda E, Chen N, Churcher AM, Hallböök F, Humphrey GW, Idris MM, Kiyama T, Liang S, Mellott D, Mu X, Murray G, Olinski RP, Raible F, Rowe M, Taylor JS, Tessmar-Raible K, Wang D, Wilson KH, Yaguchi S, Gaasterland T, Galindo BE, Gunaratne HJ, Juliano C, Kinukawa M, Moy GW, Neill AT, Nomura M, Raisch M, Reade A, Roux MM, Song JL, Su YH, Townley IK, Voronina E, Wong JL, Amore G, Branno M, Brown ER, Cavalieri V, Duboc V, Duloquin L, Flytzanis C, Gache C, Lapraz F, Lepage T, Locascio A, Martinez P, Matassi G, Matranga V, Range R, Rizzo F, Röttinger E, Beane W, Bradham C, Byrum C, Glenn T, Hussain S, Manning G, Miranda E, Thomason R, Walton K, Wikramanayke A, Wu SY, Xu R, Brown CT, Chen L, Gray RF, Lee PY, Nam J, Oliveri P, Smith J, Muzny D, Bell S, Chacko J, Cree A, Curry S, Davis C, Dinh H, Dugan-Rocha S, Fowler J, Gill R, Hamilton C, Hernandez J, Hines S, Hume J, Jackson L, Jolivet A, Kovar C, Lee S, Lewis L, Miner G, Morgan M, Nazareth LV, Okwuonu G, Parker D, Pu LL, Thorn R, Wright R., Science. November 10, 2006; 314 (5801): 941-52.
The sea urchin embryo as a model for studying efflux transporters: roles and energy cost., Epel D, Cole B, Hamdoun A, Thurber RV., Mar Environ Res. July 1, 2006; 62 Suppl S1-4.
Activation of multidrug efflux transporter activity at fertilization in sea urchin embryos (Strongylocentrotus purpuratus)., Hamdoun AM, Cherr GN, Roepke TA, Epel D., Dev Biol. December 15, 2004; 276 (2): 452-62.
Emerging contaminants--pesticides, PPCPs, microbial degradation products and natural substances as inhibitors of multixenobiotic defense in aquatic organisms., Smital T, Luckenbach T, Sauerborn R, Hamdoun AM, Vega RL, Epel D., Mutat Res. August 18, 2004; 552 (1-2): 101-17.
Tolerance to biodegraded crude oil in marine invertebrate embryos and larvae is associated with expression of a multixenobiotic resistance transporter., Hamdoun AM, Griffin FJ, Cherr GN., Aquat Toxicol. November 13, 2002; 61 (1-2): 127-40.

Local and global changes in cell density induce reorganisation of 3D packing in a proliferating epithelium., Barone V, Tagua A, Román JÁA, Hamdoun A, Garrido-García J, Lyons DC, Escudero LM., Development. April 15, 2024;

Cold storage and cryopreservation methods for spermatozoa of the sea urchins Lytechinus pictus and Strongylocentrotus purpuratus., Vacquier VD, Hamdoun A., Dev Dyn. February 10, 2024;

Solute carrier (SLC) expression reveals skeletogenic cell diversity., Lee Y, Tjeerdema E, Kling S, Chang N, Hamdoun A., Dev Biol. November 1, 2023; 503 68-82.

Generation of a homozygous mutant drug transporter (ABCB1) knockout line in the sea urchin Lytechinus pictus., Vyas H, Schrankel CS, Espinoza JA, Mitchell KL, Nesbit KT, Jackson E, Chang N, Lee Y, Warner J, Reitzel A, Lyons DC, Hamdoun A., Development. June 1, 2022; 149 (11):

New techniques for creating parthenogenetic larvae of the sea urchin Lytechinus pictus for gene expression studies., Vacquier VD, Hamdoun A., Dev Dyn. December 1, 2021; 250 (12): 1828-1833.

Chromosomal-Level Genome Assembly of the Painted Sea Urchin Lytechinus pictus: A Genetically Enabled Model System for Cell Biology and Embryonic Development., Warner JF, Lord JW, Schreiter SA, Nesbit KT, Hamdoun A, Lyons DC., Genome Biol Evol. April 5, 2021; 13 (4):

CRISPR/Cas9 mutagenesis reveals a role for ABCB1 in gut immune responses to Vibrio diazotrophicus in sea urchin larvae., Fleming TJ, Schrankel CS, Vyas H, Rosenblatt HD, Hamdoun A., J Exp Biol. April 1, 2021; 224 (7):

Early patterning of ABCB, ABCC, and ABCG transporters establishes unique territories of small molecule transport in embryonic mesoderm and endoderm., Schrankel CS, Hamdoun A., Dev Biol. April 1, 2021; 472 115-124.

Embryo, larval, and juvenile staging of Lytechinus pictus from fertilization through sexual maturation., Nesbit KT, Hamdoun A., Dev Dyn. November 1, 2020; 249 (11): 1334-1346.

Inhibitory effects of neurotoxin β-N-methylamino-L-alanine on fertilization and early development of the sea urchin Lytechinus pictus., Li A, Espinoza J, Hamdoun A., Aquat Toxicol. April 1, 2020; 221 105425.

The painted sea urchin, Lytechinus pictus, as a genetically-enabled developmental model., Nesbit KT, Fleming T, Batzel G, Pouv A, Rosenblatt HD, Pace DA, Hamdoun A, Lyons DC., Methods Cell Biol. January 1, 2019; 150 105-123.

Methods to label, isolate, and image sea urchin small micromeres, the primordial germ cells (PGCs)., Campanale JP, Hamdoun A, Wessel GM, Su YH, Oulhen N., Methods Cell Biol. January 1, 2019; 150 269-292.

A teaching laboratory on the activation of xenobiotic transporters at fertilization of sea urchins., Shipp LE, Hill RZ, Hamdoun A., Methods Cell Biol. January 1, 2019; 150 429-447.

Generation, expression and utilization of single-domain antibodies for in vivo protein localization and manipulation in sea urchin embryos., Schrankel CS, Gökirmak T, Lee CW, Chang G, Hamdoun A., Methods Cell Biol. January 1, 2019; 151 353-376.

A vesicular Na+/Ca2+ exchanger in coral calcifying cells., Barron ME, Thies AB, Espinoza JA, Barott KL, Hamdoun A, Tresguerres M., PLoS One. January 1, 2018; 13 (10): e0205367.

Functional diversification of sea urchin ABCC1 (MRP1) by alternative splicing., Gökirmak T, Campanale JP, Reitzel AM, Shipp LE, Moy GW, Hamdoun A., Am J Physiol Cell Physiol. June 1, 2016; 310 (11): C911-20.

ADP-ribosyl cyclases regulate early development of the sea urchin., Ramakrishnan L, Uhlinger K, Dale L, Hamdoun A, Patel S., Messenger (Los Angel). June 1, 2016; 5 (1-2): 100-106.

ABCC5 is required for cAMP-mediated hindgut invagination in sea urchin embryos., Shipp LE, Hill RZ, Moy GW, Gökırmak T, Hamdoun A., Development. October 15, 2015; 142 (20): 3537-48.

Transport in technicolor: mapping ATP-binding cassette transporters in sea urchin embryos., Gökirmak T, Shipp LE, Campanale JP, Nicklisch SC, Hamdoun A., Mol Reprod Dev. September 1, 2014; 81 (9): 778-93.

Deadenylase depletion protects inherited mRNAs in primordial germ cells., Swartz SZ, Reich AM, Oulhen N, Raz T, Milos PM, Campanale JP, Hamdoun A, Wessel GM., Development. August 1, 2014; 141 (16): 3134-42.

Migration of sea urchin primordial germ cells., Campanale JP, Gökirmak T, Espinoza JA, Oulhen N, Wessel GM, Hamdoun A., Dev Dyn. July 1, 2014; 243 (7): 917-27.

Cost, effectiveness and environmental relevance of multidrug transporters in sea urchin embryos., Cole BJ, Hamdoun A, Epel D., J Exp Biol. October 15, 2013; 216 (Pt 20): 3896-905.

Localization and substrate selectivity of sea urchin multidrug (MDR) efflux transporters., Gökirmak T, Campanale JP, Shipp LE, Moy GW, Tao H, Hamdoun A., J Biol Chem. December 21, 2012; 287 (52): 43876-83.

Actin polymerization controls the activation of multidrug efflux at fertilization by translocation and fine-scale positioning of ABCB1 on microvilli., Whalen K, Reitzel AM, Hamdoun A., Mol Biol Cell. September 1, 2012; 23 (18): 3663-72.

ATP-binding cassette (ABC) transporter expression and localization in sea urchin development., Shipp LE, Hamdoun A., Dev Dyn. June 1, 2012; 241 (6): 1111-24.

Programmed reduction of ABC transporter activity in sea urchin germline progenitors., Campanale JP, Hamdoun A., Development. February 1, 2012; 139 (4): 783-92.

Multidrug efflux transporters limit accumulation of inorganic, but not organic, mercury in sea urchin embryos., Bosnjak I, Uhlinger KR, Heim W, Smital T, Franekić-Colić J, Coale K, Epel D, Hamdoun A., Environ Sci Technol. November 1, 2009; 43 (21): 8374-80.

The chemical defensome: environmental sensing and response genes in the Strongylocentrotus purpuratus genome., Goldstone JV, Hamdoun A, Cole BJ, Howard-Ashby M, Nebert DW, Scally M, Dean M, Epel D, Hahn ME, Stegeman JJ., Dev Biol. December 1, 2006; 300 (1): 366-84.

Increase in multidrug transport activity is associated with oocyte maturation in sea stars., Roepke TA, Hamdoun AM, Cherr GN., Dev Growth Differ. December 1, 2006; 48 (9): 559-73.

The genome of the sea urchin Strongylocentrotus purpuratus., Sea Urchin Genome Sequencing Consortium, Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, Foltz KR, Hamdoun A, Hynes RO, Klein WH, Marzluff W, McClay DR, Morris RL, Mushegian A, Rast JP, Smith LC, Thorndyke MC, Vacquier VD, Wessel GM, Wray G, Zhang L, Elsik CG, Ermolaeva O, Hlavina W, Hofmann G, Kitts P, Landrum MJ, Mackey AJ, Maglott D, Panopoulou G, Poustka AJ, Pruitt K, Sapojnikov V, Song X, Souvorov A, Solovyev V, Wei Z, Whittaker CA, Worley K, Durbin KJ, Shen Y, Fedrigo O, Garfield D, Haygood R, Primus A, Satija R, Severson T, Gonzalez-Garay ML, Jackson AR, Milosavljevic A, Tong M, Killian CE, Livingston BT, Wilt FH, Adams N, Bellé R, Carbonneau S, Cheung R, Cormier P, Cosson B, Croce J, Fernandez-Guerra A, Genevière AM, Goel M, Kelkar H, Morales J, Mulner-Lorillon O, Robertson AJ, Goldstone JV, Cole B, Epel D, Gold B, Hahn ME, Howard-Ashby M, Scally M, Stegeman JJ, Allgood EL, Cool J, Judkins KM, McCafferty SS, Musante AM, Obar RA, Rawson AP, Rossetti BJ, Gibbons IR, Hoffman MP, Leone A, Istrail S, Materna SC, Samanta MP, Stolc V, Tongprasit W, Tu Q, Bergeron KF, Brandhorst BP, Whittle J, Berney K, Bottjer DJ, Calestani C, Peterson K, Chow E, Yuan QA, Elhaik E, Graur D, Reese JT, Bosdet I, Heesun S, Marra MA, Schein J, Anderson MK, Brockton V, Buckley KM, Cohen AH, Fugmann SD, Hibino T, Loza-Coll M, Majeske AJ, Messier C, Nair SV, Pancer Z, Terwilliger DP, Agca C, Arboleda E, Chen N, Churcher AM, Hallböök F, Humphrey GW, Idris MM, Kiyama T, Liang S, Mellott D, Mu X, Murray G, Olinski RP, Raible F, Rowe M, Taylor JS, Tessmar-Raible K, Wang D, Wilson KH, Yaguchi S, Gaasterland T, Galindo BE, Gunaratne HJ, Juliano C, Kinukawa M, Moy GW, Neill AT, Nomura M, Raisch M, Reade A, Roux MM, Song JL, Su YH, Townley IK, Voronina E, Wong JL, Amore G, Branno M, Brown ER, Cavalieri V, Duboc V, Duloquin L, Flytzanis C, Gache C, Lapraz F, Lepage T, Locascio A, Martinez P, Matassi G, Matranga V, Range R, Rizzo F, Röttinger E, Beane W, Bradham C, Byrum C, Glenn T, Hussain S, Manning G, Miranda E, Thomason R, Walton K, Wikramanayke A, Wu SY, Xu R, Brown CT, Chen L, Gray RF, Lee PY, Nam J, Oliveri P, Smith J, Muzny D, Bell S, Chacko J, Cree A, Curry S, Davis C, Dinh H, Dugan-Rocha S, Fowler J, Gill R, Hamilton C, Hernandez J, Hines S, Hume J, Jackson L, Jolivet A, Kovar C, Lee S, Lewis L, Miner G, Morgan M, Nazareth LV, Okwuonu G, Parker D, Pu LL, Thorn R, Wright R., Science. November 10, 2006; 314 (5801): 941-52.

The sea urchin embryo as a model for studying efflux transporters: roles and energy cost., Epel D, Cole B, Hamdoun A, Thurber RV., Mar Environ Res. July 1, 2006; 62 Suppl S1-4.

Activation of multidrug efflux transporter activity at fertilization in sea urchin embryos (Strongylocentrotus purpuratus)., Hamdoun AM, Cherr GN, Roepke TA, Epel D., Dev Biol. December 15, 2004; 276 (2): 452-62.

Emerging contaminants--pesticides, PPCPs, microbial degradation products and natural substances as inhibitors of multixenobiotic defense in aquatic organisms., Smital T, Luckenbach T, Sauerborn R, Hamdoun AM, Vega RL, Epel D., Mutat Res. August 18, 2004; 552 (1-2): 101-17.

Tolerance to biodegraded crude oil in marine invertebrate embryos and larvae is associated with expression of a multixenobiotic resistance transporter., Hamdoun AM, Griffin FJ, Cherr GN., Aquat Toxicol. November 13, 2002; 61 (1-2): 127-40.

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