Cynthia Bradham - Publications

Publications (24)

ECB-PERS-4056

Publications By Cynthia Bradham

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Polychrome labeling reveals skeletal triradiate and elongation dynamics and abnormalities in patterning cue-perturbed embryos., Descoteaux AE, Zuch DT, Bradham CA., Dev Biol. June 1, 2023; 498 1-13.
Voltage-gated sodium channel activity mediates sea urchin larval skeletal patterning through spatial regulation of Wnt5 expression., Thomas CF, Hawkins DY, Skidanova V, Marrujo SR, Gibson J, Ye Z, Bradham CA., Development. May 15, 2023; 150 (10):
Ethanol exposure perturbs sea urchin development and disrupts developmental timing., Rodríguez-Sastre N, Shapiro N, Hawkins DY, Lion AT, Peyreau M, Correa AE, Dionne K, Bradham CA., Dev Biol. January 1, 2023; 493 89-102.
Derivedness Index for Estimating Degree of Phenotypic Evolution of Embryos: A Study of Comparative Transcriptomic Analyses of Chordates and Echinoderms., Leong JCK, Li Y, Uesaka M, Uchida Y, Omori A, Hao M, Wan W, Dong Y, Ren Y, Zhang S, Zeng T, Wang F, Chen L, Wessel G, Livingston BT, Bradham C, Wang W, Irie N., Front Cell Dev Biol. January 1, 2021; 9 749963.
Genomic insights of body plan transitions from bilateral to pentameral symmetry in Echinoderms., Li Y, Omori A, Flores RL, Satterfield S, Nguyen C, Ota T, Tsurugaya T, Ikuta T, Ikeo K, Kikuchi M, Leong JCK, Reich A, Hao M, Wan W, Dong Y, Ren Y, Zhang S, Zeng T, Uesaka M, Uchida Y, Li X, Shibata TF, Bino T, Ogawa K, Shigenobu S, Kondo M, Wang F, Chen L, Wessel G, Saiga H, Cameron RA, Livingston B, Bradham C, Wang W, Irie N., Commun Biol. July 10, 2020; 3 (1): 371.
The developmental transcriptome for Lytechinus variegatus exhibits temporally punctuated gene expression changes., Hogan JD, Keenan JL, Luo L, Ibn-Salem J, Lamba A, Schatzberg D, Piacentino ML, Zuch DT, Core AB, Blumberg C, Timmermann B, Grau JH, Speranza E, Andrade-Navarro MA, Irie N, Poustka AJ, Bradham CA., Dev Biol. April 15, 2020; 460 (2): 139-154.
Spatially mapping gene expression in sea urchin primary mesenchyme cells., Zuch DT, Bradham CA., Methods Cell Biol. January 1, 2019; 151 433-442.
Measuring voltage and ion concentrations in live embryos., Rodriguez-Sastre N, Thomas CF, Bradham CA., Methods Cell Biol. January 1, 2019; 151 459-472.
Zygotic LvBMP5-8 is required for skeletal patterning and for left-right but not dorsal-ventral specification in the sea urchin embryo., Piacentino ML, Chung O, Ramachandran J, Zuch DT, Yu J, Conaway EA, Reyna AE, Bradham CA., Dev Biol. April 1, 2016; 412 (1): 44-56.
RNA-Seq identifies SPGs as a ventral skeletal patterning cue in sea urchins., Piacentino ML, Zuch DT, Fishman J, Rose S, Speranza EE, Li C, Yu J, Chung O, Ramachandran J, Ferrell P, Patel V, Reyna A, Hameeduddin H, Chaves J, Hewitt FB, Bardot E, Lee D, Core AB, Hogan JD, Keenan JL, Luo L, Coulombe-Huntington J, Blute TA, Oleinik E, Ibn-Salem J, Poustka AJ, Bradham CA., Development. February 15, 2016; 143 (4): 703-14.
H(+)/K(+) ATPase activity is required for biomineralization in sea urchin embryos., Schatzberg D, Lawton M, Hadyniak SE, Ross EJ, Carney T, Beane WS, Levin M, Bradham CA., Dev Biol. October 15, 2015; 406 (2): 259-70.
Late Alk4/5/7 signaling is required for anterior skeletal patterning in sea urchin embryos., Piacentino ML, Ramachandran J, Bradham CA., Development. March 1, 2015; 142 (5): 943-52.
A computational model for BMP movement in sea urchin embryos., van Heijster P, Hardway H, Kaper TJ, Bradham CA., J Theor Biol. December 21, 2014; 363 277-89.
Pantropic retroviruses as a transduction tool for sea urchin embryos., Core AB, Reyna AE, Conaway EA, Bradham CA., Proc Natl Acad Sci U S A. April 3, 2012; 109 (14): 5334-9.
Mitochondrial gradients and p38 activity in early sea urchin embryos., Modell JW, Bradham CA., Mol Reprod Dev. April 1, 2011; 78 (4): 225.
Chordin is required for neural but not axial development in sea urchin embryos., Bradham CA, Oikonomou C, Kühn A, Core AB, Modell JW, McClay DR, Poustka AJ., Dev Biol. April 15, 2009; 328 (2): 221-33.
Translational control genes in the sea urchin genome., Morales J, Mulner-Lorillon O, Cosson B, Morin E, Bellé R, Bradham CA, Beane WS, Cormier P., Dev Biol. December 1, 2006; 300 (1): 293-307.
The sea urchin kinome: a first look., Bradham CA, Foltz KR, Beane WS, Arnone MI, Rizzo F, Coffman JA, Mushegian A, Goel M, Morales J, Geneviere AM, Lapraz F, Robertson AJ, Kelkar H, Loza-Coll M, Townley IK, Raisch M, Roux MM, Lepage T, Gache C, McClay DR, Manning G., Dev Biol. December 1, 2006; 300 (1): 180-93.
A functional genomic and proteomic perspective of sea urchin calcium signaling and egg activation., Roux MM, Townley IK, Raisch M, Reade A, Bradham C, Humphreys G, Gunaratne HJ, Killian CE, Moy G, Su YH, Ettensohn CA, Wilt F, Vacquier VD, Burke RD, Wessel G, Foltz KR., Dev Biol. December 1, 2006; 300 (1): 416-33.
The genomic repertoire for cell cycle control and DNA metabolism in S. purpuratus., Fernandez-Guerra A, Aze A, Morales J, Mulner-Lorillon O, Cosson B, Cormier P, Bradham C, Adams N, Robertson AJ, Marzluff WF, Coffman JA, Genevière AM., Dev Biol. December 1, 2006; 300 (1): 238-51.
RTK and TGF-beta signaling pathways genes in the sea urchin genome., Lapraz F, Röttinger E, Duboc V, Range R, Duloquin L, Walton K, Wu SY, Bradham C, Loza MA, Hibino T, Wilson K, Poustka A, McClay D, Angerer L, Gache C, Lepage T., Dev Biol. December 1, 2006; 300 (1): 132-52.
The genome of the sea urchin Strongylocentrotus purpuratus., Sea Urchin Genome Sequencing Consortium, Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, Foltz KR, Hamdoun A, Hynes RO, Klein WH, Marzluff W, McClay DR, Morris RL, Mushegian A, Rast JP, Smith LC, Thorndyke MC, Vacquier VD, Wessel GM, Wray G, Zhang L, Elsik CG, Ermolaeva O, Hlavina W, Hofmann G, Kitts P, Landrum MJ, Mackey AJ, Maglott D, Panopoulou G, Poustka AJ, Pruitt K, Sapojnikov V, Song X, Souvorov A, Solovyev V, Wei Z, Whittaker CA, Worley K, Durbin KJ, Shen Y, Fedrigo O, Garfield D, Haygood R, Primus A, Satija R, Severson T, Gonzalez-Garay ML, Jackson AR, Milosavljevic A, Tong M, Killian CE, Livingston BT, Wilt FH, Adams N, Bellé R, Carbonneau S, Cheung R, Cormier P, Cosson B, Croce J, Fernandez-Guerra A, Genevière AM, Goel M, Kelkar H, Morales J, Mulner-Lorillon O, Robertson AJ, Goldstone JV, Cole B, Epel D, Gold B, Hahn ME, Howard-Ashby M, Scally M, Stegeman JJ, Allgood EL, Cool J, Judkins KM, McCafferty SS, Musante AM, Obar RA, Rawson AP, Rossetti BJ, Gibbons IR, Hoffman MP, Leone A, Istrail S, Materna SC, Samanta MP, Stolc V, Tongprasit W, Tu Q, Bergeron KF, Brandhorst BP, Whittle J, Berney K, Bottjer DJ, Calestani C, Peterson K, Chow E, Yuan QA, Elhaik E, Graur D, Reese JT, Bosdet I, Heesun S, Marra MA, Schein J, Anderson MK, Brockton V, Buckley KM, Cohen AH, Fugmann SD, Hibino T, Loza-Coll M, Majeske AJ, Messier C, Nair SV, Pancer Z, Terwilliger DP, Agca C, Arboleda E, Chen N, Churcher AM, Hallböök F, Humphrey GW, Idris MM, Kiyama T, Liang S, Mellott D, Mu X, Murray G, Olinski RP, Raible F, Rowe M, Taylor JS, Tessmar-Raible K, Wang D, Wilson KH, Yaguchi S, Gaasterland T, Galindo BE, Gunaratne HJ, Juliano C, Kinukawa M, Moy GW, Neill AT, Nomura M, Raisch M, Reade A, Roux MM, Song JL, Su YH, Townley IK, Voronina E, Wong JL, Amore G, Branno M, Brown ER, Cavalieri V, Duboc V, Duloquin L, Flytzanis C, Gache C, Lapraz F, Lepage T, Locascio A, Martinez P, Matassi G, Matranga V, Range R, Rizzo F, Röttinger E, Beane W, Bradham C, Byrum C, Glenn T, Hussain S, Manning G, Miranda E, Thomason R, Walton K, Wikramanayke A, Wu SY, Xu R, Brown CT, Chen L, Gray RF, Lee PY, Nam J, Oliveri P, Smith J, Muzny D, Bell S, Chacko J, Cree A, Curry S, Davis C, Dinh H, Dugan-Rocha S, Fowler J, Gill R, Hamilton C, Hernandez J, Hines S, Hume J, Jackson L, Jolivet A, Kovar C, Lee S, Lewis L, Miner G, Morgan M, Nazareth LV, Okwuonu G, Parker D, Pu LL, Thorn R, Wright R., Science. November 10, 2006; 314 (5801): 941-52.
p38 MAPK is essential for secondary axis specification and patterning in sea urchin embryos., Bradham CA, McClay DR., Development. January 1, 2006; 133 (1): 21-32.
PI3K inhibitors block skeletogenesis but not patterning in sea urchin embryos., Bradham CA, Miranda EL, McClay DR., Dev Dyn. April 1, 2004; 229 (4): 713-21.

Polychrome labeling reveals skeletal triradiate and elongation dynamics and abnormalities in patterning cue-perturbed embryos., Descoteaux AE, Zuch DT, Bradham CA., Dev Biol. June 1, 2023; 498 1-13.

Voltage-gated sodium channel activity mediates sea urchin larval skeletal patterning through spatial regulation of Wnt5 expression., Thomas CF, Hawkins DY, Skidanova V, Marrujo SR, Gibson J, Ye Z, Bradham CA., Development. May 15, 2023; 150 (10):

Ethanol exposure perturbs sea urchin development and disrupts developmental timing., Rodríguez-Sastre N, Shapiro N, Hawkins DY, Lion AT, Peyreau M, Correa AE, Dionne K, Bradham CA., Dev Biol. January 1, 2023; 493 89-102.

Derivedness Index for Estimating Degree of Phenotypic Evolution of Embryos: A Study of Comparative Transcriptomic Analyses of Chordates and Echinoderms., Leong JCK, Li Y, Uesaka M, Uchida Y, Omori A, Hao M, Wan W, Dong Y, Ren Y, Zhang S, Zeng T, Wang F, Chen L, Wessel G, Livingston BT, Bradham C, Wang W, Irie N., Front Cell Dev Biol. January 1, 2021; 9 749963.

Genomic insights of body plan transitions from bilateral to pentameral symmetry in Echinoderms., Li Y, Omori A, Flores RL, Satterfield S, Nguyen C, Ota T, Tsurugaya T, Ikuta T, Ikeo K, Kikuchi M, Leong JCK, Reich A, Hao M, Wan W, Dong Y, Ren Y, Zhang S, Zeng T, Uesaka M, Uchida Y, Li X, Shibata TF, Bino T, Ogawa K, Shigenobu S, Kondo M, Wang F, Chen L, Wessel G, Saiga H, Cameron RA, Livingston B, Bradham C, Wang W, Irie N., Commun Biol. July 10, 2020; 3 (1): 371.

The developmental transcriptome for Lytechinus variegatus exhibits temporally punctuated gene expression changes., Hogan JD, Keenan JL, Luo L, Ibn-Salem J, Lamba A, Schatzberg D, Piacentino ML, Zuch DT, Core AB, Blumberg C, Timmermann B, Grau JH, Speranza E, Andrade-Navarro MA, Irie N, Poustka AJ, Bradham CA., Dev Biol. April 15, 2020; 460 (2): 139-154.

Spatially mapping gene expression in sea urchin primary mesenchyme cells., Zuch DT, Bradham CA., Methods Cell Biol. January 1, 2019; 151 433-442.

Measuring voltage and ion concentrations in live embryos., Rodriguez-Sastre N, Thomas CF, Bradham CA., Methods Cell Biol. January 1, 2019; 151 459-472.

Zygotic LvBMP5-8 is required for skeletal patterning and for left-right but not dorsal-ventral specification in the sea urchin embryo., Piacentino ML, Chung O, Ramachandran J, Zuch DT, Yu J, Conaway EA, Reyna AE, Bradham CA., Dev Biol. April 1, 2016; 412 (1): 44-56.

RNA-Seq identifies SPGs as a ventral skeletal patterning cue in sea urchins., Piacentino ML, Zuch DT, Fishman J, Rose S, Speranza EE, Li C, Yu J, Chung O, Ramachandran J, Ferrell P, Patel V, Reyna A, Hameeduddin H, Chaves J, Hewitt FB, Bardot E, Lee D, Core AB, Hogan JD, Keenan JL, Luo L, Coulombe-Huntington J, Blute TA, Oleinik E, Ibn-Salem J, Poustka AJ, Bradham CA., Development. February 15, 2016; 143 (4): 703-14.

H(+)/K(+) ATPase activity is required for biomineralization in sea urchin embryos., Schatzberg D, Lawton M, Hadyniak SE, Ross EJ, Carney T, Beane WS, Levin M, Bradham CA., Dev Biol. October 15, 2015; 406 (2): 259-70.

Late Alk4/5/7 signaling is required for anterior skeletal patterning in sea urchin embryos., Piacentino ML, Ramachandran J, Bradham CA., Development. March 1, 2015; 142 (5): 943-52.

A computational model for BMP movement in sea urchin embryos., van Heijster P, Hardway H, Kaper TJ, Bradham CA., J Theor Biol. December 21, 2014; 363 277-89.

Pantropic retroviruses as a transduction tool for sea urchin embryos., Core AB, Reyna AE, Conaway EA, Bradham CA., Proc Natl Acad Sci U S A. April 3, 2012; 109 (14): 5334-9.

Mitochondrial gradients and p38 activity in early sea urchin embryos., Modell JW, Bradham CA., Mol Reprod Dev. April 1, 2011; 78 (4): 225.

Chordin is required for neural but not axial development in sea urchin embryos., Bradham CA, Oikonomou C, Kühn A, Core AB, Modell JW, McClay DR, Poustka AJ., Dev Biol. April 15, 2009; 328 (2): 221-33.

Translational control genes in the sea urchin genome., Morales J, Mulner-Lorillon O, Cosson B, Morin E, Bellé R, Bradham CA, Beane WS, Cormier P., Dev Biol. December 1, 2006; 300 (1): 293-307.

The sea urchin kinome: a first look., Bradham CA, Foltz KR, Beane WS, Arnone MI, Rizzo F, Coffman JA, Mushegian A, Goel M, Morales J, Geneviere AM, Lapraz F, Robertson AJ, Kelkar H, Loza-Coll M, Townley IK, Raisch M, Roux MM, Lepage T, Gache C, McClay DR, Manning G., Dev Biol. December 1, 2006; 300 (1): 180-93.

A functional genomic and proteomic perspective of sea urchin calcium signaling and egg activation., Roux MM, Townley IK, Raisch M, Reade A, Bradham C, Humphreys G, Gunaratne HJ, Killian CE, Moy G, Su YH, Ettensohn CA, Wilt F, Vacquier VD, Burke RD, Wessel G, Foltz KR., Dev Biol. December 1, 2006; 300 (1): 416-33.

The genomic repertoire for cell cycle control and DNA metabolism in S. purpuratus., Fernandez-Guerra A, Aze A, Morales J, Mulner-Lorillon O, Cosson B, Cormier P, Bradham C, Adams N, Robertson AJ, Marzluff WF, Coffman JA, Genevière AM., Dev Biol. December 1, 2006; 300 (1): 238-51.

RTK and TGF-beta signaling pathways genes in the sea urchin genome., Lapraz F, Röttinger E, Duboc V, Range R, Duloquin L, Walton K, Wu SY, Bradham C, Loza MA, Hibino T, Wilson K, Poustka A, McClay D, Angerer L, Gache C, Lepage T., Dev Biol. December 1, 2006; 300 (1): 132-52.

The genome of the sea urchin Strongylocentrotus purpuratus., Sea Urchin Genome Sequencing Consortium, Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, Foltz KR, Hamdoun A, Hynes RO, Klein WH, Marzluff W, McClay DR, Morris RL, Mushegian A, Rast JP, Smith LC, Thorndyke MC, Vacquier VD, Wessel GM, Wray G, Zhang L, Elsik CG, Ermolaeva O, Hlavina W, Hofmann G, Kitts P, Landrum MJ, Mackey AJ, Maglott D, Panopoulou G, Poustka AJ, Pruitt K, Sapojnikov V, Song X, Souvorov A, Solovyev V, Wei Z, Whittaker CA, Worley K, Durbin KJ, Shen Y, Fedrigo O, Garfield D, Haygood R, Primus A, Satija R, Severson T, Gonzalez-Garay ML, Jackson AR, Milosavljevic A, Tong M, Killian CE, Livingston BT, Wilt FH, Adams N, Bellé R, Carbonneau S, Cheung R, Cormier P, Cosson B, Croce J, Fernandez-Guerra A, Genevière AM, Goel M, Kelkar H, Morales J, Mulner-Lorillon O, Robertson AJ, Goldstone JV, Cole B, Epel D, Gold B, Hahn ME, Howard-Ashby M, Scally M, Stegeman JJ, Allgood EL, Cool J, Judkins KM, McCafferty SS, Musante AM, Obar RA, Rawson AP, Rossetti BJ, Gibbons IR, Hoffman MP, Leone A, Istrail S, Materna SC, Samanta MP, Stolc V, Tongprasit W, Tu Q, Bergeron KF, Brandhorst BP, Whittle J, Berney K, Bottjer DJ, Calestani C, Peterson K, Chow E, Yuan QA, Elhaik E, Graur D, Reese JT, Bosdet I, Heesun S, Marra MA, Schein J, Anderson MK, Brockton V, Buckley KM, Cohen AH, Fugmann SD, Hibino T, Loza-Coll M, Majeske AJ, Messier C, Nair SV, Pancer Z, Terwilliger DP, Agca C, Arboleda E, Chen N, Churcher AM, Hallböök F, Humphrey GW, Idris MM, Kiyama T, Liang S, Mellott D, Mu X, Murray G, Olinski RP, Raible F, Rowe M, Taylor JS, Tessmar-Raible K, Wang D, Wilson KH, Yaguchi S, Gaasterland T, Galindo BE, Gunaratne HJ, Juliano C, Kinukawa M, Moy GW, Neill AT, Nomura M, Raisch M, Reade A, Roux MM, Song JL, Su YH, Townley IK, Voronina E, Wong JL, Amore G, Branno M, Brown ER, Cavalieri V, Duboc V, Duloquin L, Flytzanis C, Gache C, Lapraz F, Lepage T, Locascio A, Martinez P, Matassi G, Matranga V, Range R, Rizzo F, Röttinger E, Beane W, Bradham C, Byrum C, Glenn T, Hussain S, Manning G, Miranda E, Thomason R, Walton K, Wikramanayke A, Wu SY, Xu R, Brown CT, Chen L, Gray RF, Lee PY, Nam J, Oliveri P, Smith J, Muzny D, Bell S, Chacko J, Cree A, Curry S, Davis C, Dinh H, Dugan-Rocha S, Fowler J, Gill R, Hamilton C, Hernandez J, Hines S, Hume J, Jackson L, Jolivet A, Kovar C, Lee S, Lewis L, Miner G, Morgan M, Nazareth LV, Okwuonu G, Parker D, Pu LL, Thorn R, Wright R., Science. November 10, 2006; 314 (5801): 941-52.

p38 MAPK is essential for secondary axis specification and patterning in sea urchin embryos., Bradham CA, McClay DR., Development. January 1, 2006; 133 (1): 21-32.

PI3K inhibitors block skeletogenesis but not patterning in sea urchin embryos., Bradham CA, Miranda EL, McClay DR., Dev Dyn. April 1, 2004; 229 (4): 713-21.

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