Cesar Arenas-Mena - Publications

Publications (16)

ECB-PERS-4053

Publications By Cesar Arenas-Mena

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Widespread priming of transcriptional regulatory elements by incipient accessibility or RNA polymerase II pause in early embryos of the sea urchin Strongylocentrotus purpuratus., Arenas-Mena C, Akin S., Genetics. October 4, 2023; 225 (2):
Identification and prediction of developmental enhancers in sea urchin embryos., Arenas-Mena C, Miljovska S, Rice EJ, Gurges J, Shashikant T, Wang Z, Ercan S, Danko CG., BMC Genomics. October 19, 2021; 22 (1): 751.
Electron microscopic characterization of nuclear egress in the sea urchin gastrula., LaMassa N, Arenas-Mena C, Phillips GR., J Morphol. May 1, 2018; 279 (5): 609-615.
Transcriptional and post-transcriptional regulation of histone variant H2A.Z during sea urchin development., Hajdu M, Calle J, Puno A, Haruna A, Arenas-Mena C., Dev Growth Differ. December 1, 2016; 58 (9): 727-740.
Expression of GATA and POU transcription factors during the development of the planktotrophic trochophore of the polychaete serpulid Hydroides elegans., Wong KS, Arenas-Mena C., Evol Dev. July 1, 2016; 18 (4): 254-66.
Brachyury, Tbx2/3 and sall expression during embryogenesis of the indirectly developing polychaete Hydroides elegans., Arenas-Mena C., Int J Dev Biol. January 1, 2013; 57 (1): 73-83.
Histone H2A.Z expression in two indirectly developing marine invertebrates correlates with undifferentiated and multipotent cells., Arenas-Mena C, Wong KS, Arandi-Foroshani NR., Evol Dev. January 1, 2007; 9 (3): 231-43.
Hindgut specification and cell-adhesion functions of Sphox11/13b in the endoderm of the sea urchin embryo., Arenas-Mena C, Cameron RA, Davidson EH., Dev Growth Differ. September 1, 2006; 48 (7): 463-72.
Unusual gene order and organization of the sea urchin hox cluster., Cameron RA, Rowen L, Nesbitt R, Bloom S, Rast JP, Berney K, Arenas-Mena C, Martinez P, Lucas S, Richardson PM, Davidson EH, Peterson KJ, Hood L., J Exp Zool B Mol Dev Evol. January 15, 2006; 306 (1): 45-58.
Expression patterns of four different regulatory genes that function during sea urchin development., Minokawa T, Rast JP, Arenas-Mena C, Franco CB, Davidson EH., Gene Expr Patterns. July 1, 2004; 4 (4): 449-56.
A provisional regulatory gene network for specification of endomesoderm in the sea urchin embryo., Davidson EH, Rast JP, Oliveri P, Ransick A, Calestani C, Yuh CH, Minokawa T, Amore G, Hinman V, Arenas-Mena C, Otim O, Brown CT, Livi CB, Lee PY, Revilla R, Schilstra MJ, Clarke PJ, Rust AG, Pan Z, Arnone MI, Rowen L, Cameron RA, McClay DR, Hood L, Bolouri H., Dev Biol. June 1, 2002; 246 (1): 162-90.
A genomic regulatory network for development., Davidson EH, Rast JP, Oliveri P, Ransick A, Calestani C, Yuh CH, Minokawa T, Amore G, Hinman V, Arenas-Mena C, Otim O, Brown CT, Livi CB, Lee PY, Revilla R, Rust AG, Pan Zj, Schilstra MJ, Clarke PJ, Arnone MI, Rowen L, Cameron RA, McClay DR, Hood L, Bolouri H., Science. March 1, 2002; 295 (5560): 1669-78.
Spatial expression of Hox cluster genes in the ontogeny of a sea urchin., Arenas-Mena C, Cameron AR, Davidson EH., Development. November 1, 2000; 127 (21): 4631-43.
The A/P axis in echinoderm ontogeny and evolution: evidence from fossils and molecules., Peterson KJ, Arenas-Mena C, Davidson EH., Evol Dev. January 1, 2000; 2 (2): 93-101.
Organization of an echinoderm Hox gene cluster., Martinez P, Rast JP, Arenas-Mena C, Davidson EH., Proc Natl Acad Sci U S A. February 16, 1999; 96 (4): 1469-74.
Expression of the Hox gene complex in the indirect development of a sea urchin., Arenas-Mena C, Martinez P, Cameron RA, Davidson EH., Proc Natl Acad Sci U S A. October 27, 1998; 95 (22): 13062-7.

Widespread priming of transcriptional regulatory elements by incipient accessibility or RNA polymerase II pause in early embryos of the sea urchin Strongylocentrotus purpuratus., Arenas-Mena C, Akin S., Genetics. October 4, 2023; 225 (2):

Identification and prediction of developmental enhancers in sea urchin embryos., Arenas-Mena C, Miljovska S, Rice EJ, Gurges J, Shashikant T, Wang Z, Ercan S, Danko CG., BMC Genomics. October 19, 2021; 22 (1): 751.

Electron microscopic characterization of nuclear egress in the sea urchin gastrula., LaMassa N, Arenas-Mena C, Phillips GR., J Morphol. May 1, 2018; 279 (5): 609-615.

Transcriptional and post-transcriptional regulation of histone variant H2A.Z during sea urchin development., Hajdu M, Calle J, Puno A, Haruna A, Arenas-Mena C., Dev Growth Differ. December 1, 2016; 58 (9): 727-740.

Expression of GATA and POU transcription factors during the development of the planktotrophic trochophore of the polychaete serpulid Hydroides elegans., Wong KS, Arenas-Mena C., Evol Dev. July 1, 2016; 18 (4): 254-66.

Brachyury, Tbx2/3 and sall expression during embryogenesis of the indirectly developing polychaete Hydroides elegans., Arenas-Mena C., Int J Dev Biol. January 1, 2013; 57 (1): 73-83.

Histone H2A.Z expression in two indirectly developing marine invertebrates correlates with undifferentiated and multipotent cells., Arenas-Mena C, Wong KS, Arandi-Foroshani NR., Evol Dev. January 1, 2007; 9 (3): 231-43.

Hindgut specification and cell-adhesion functions of Sphox11/13b in the endoderm of the sea urchin embryo., Arenas-Mena C, Cameron RA, Davidson EH., Dev Growth Differ. September 1, 2006; 48 (7): 463-72.

Unusual gene order and organization of the sea urchin hox cluster., Cameron RA, Rowen L, Nesbitt R, Bloom S, Rast JP, Berney K, Arenas-Mena C, Martinez P, Lucas S, Richardson PM, Davidson EH, Peterson KJ, Hood L., J Exp Zool B Mol Dev Evol. January 15, 2006; 306 (1): 45-58.

Expression patterns of four different regulatory genes that function during sea urchin development., Minokawa T, Rast JP, Arenas-Mena C, Franco CB, Davidson EH., Gene Expr Patterns. July 1, 2004; 4 (4): 449-56.

A provisional regulatory gene network for specification of endomesoderm in the sea urchin embryo., Davidson EH, Rast JP, Oliveri P, Ransick A, Calestani C, Yuh CH, Minokawa T, Amore G, Hinman V, Arenas-Mena C, Otim O, Brown CT, Livi CB, Lee PY, Revilla R, Schilstra MJ, Clarke PJ, Rust AG, Pan Z, Arnone MI, Rowen L, Cameron RA, McClay DR, Hood L, Bolouri H., Dev Biol. June 1, 2002; 246 (1): 162-90.

A genomic regulatory network for development., Davidson EH, Rast JP, Oliveri P, Ransick A, Calestani C, Yuh CH, Minokawa T, Amore G, Hinman V, Arenas-Mena C, Otim O, Brown CT, Livi CB, Lee PY, Revilla R, Rust AG, Pan Zj, Schilstra MJ, Clarke PJ, Arnone MI, Rowen L, Cameron RA, McClay DR, Hood L, Bolouri H., Science. March 1, 2002; 295 (5560): 1669-78.

Spatial expression of Hox cluster genes in the ontogeny of a sea urchin., Arenas-Mena C, Cameron AR, Davidson EH., Development. November 1, 2000; 127 (21): 4631-43.

The A/P axis in echinoderm ontogeny and evolution: evidence from fossils and molecules., Peterson KJ, Arenas-Mena C, Davidson EH., Evol Dev. January 1, 2000; 2 (2): 93-101.

Organization of an echinoderm Hox gene cluster., Martinez P, Rast JP, Arenas-Mena C, Davidson EH., Proc Natl Acad Sci U S A. February 16, 1999; 96 (4): 1469-74.

Expression of the Hox gene complex in the indirect development of a sea urchin., Arenas-Mena C, Martinez P, Cameron RA, Davidson EH., Proc Natl Acad Sci U S A. October 27, 1998; 95 (22): 13062-7.

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