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Echinobase: a resource to support the echinoderm research community. Telmer CA , Karimi K , Chess MM , Agalakov S , Arshinoff BI , Lotay V , Wang DZ , Chu S , Pells TJ , Vize PD , Hinman VF , Ettensohn CA ., Genetics. May 7, 2024; 227 (1):
Echinobase: leveraging an extant model organism database to build a knowledgebase supporting research on the genomics and biology of echinoderms. Arshinoff BI , Cary GA , Karimi K , Foley S , Agalakov S , Delgado F , Lotay VS , Ku CJ , Pells TJ , Beatman TR , Kim E , Cameron RA , Vize PD , Telmer CA , Croce JC , Ettensohn CA , Hinman VF ., Nucleic Acids Res. January 7, 2022; 50 (D1): D970-D979.
Classifying domain-specific text documents containing ambiguous keywords. Karimi K , Agalakov S , Telmer CA , Beatman TR , Pells TJ , Arshinoff BI , Ku CJ , Foley S , Hinman VF , Ettensohn CA , Vize PD ., Database (Oxford). September 29, 2021; 2021
Xenbase: deep integration of GEO & Fortriede JD , Pells TJ , Chu S , Chaturvedi P, Wang D , Fisher ME , James-Zorn C , Wang Y , Nenni MJ , Burns KA , Lotay VS , Ponferrada VG , Karimi K , Zorn AM , Vize PD ., Nucleic Acids Res. January 8, 2020;
Xenbase: Facilitating the Use of Xenopus to Model Human Disease. Nenni MJ , Fisher ME , James-Zorn C , Pells TJ , Ponferrada V , Chu S , Fortriede JD , Burns KA , Wang Y , Lotay VS , Wang DZ , Segerdell E, Chaturvedi P, Karimi K , Vize PD , Zorn AM ., Front Physiol. February 26, 2019; 10 154.
Xenbase: a genomic, epigenomic and transcriptomic model organism database. Karimi K , Fortriede JD , Lotay VS , Burns KA , Wang DZ, Fisher ME , Pells TJ , James-Zorn C , Wang Y , Ponferrada VG , Chu S , Chaturvedi P, Zorn AM , Vize PD ., Nucleic Acids Res. January 4, 2018; 46 (D1): D861-D868.
Navigating Xenbase: An Integrated Xenopus Genomics and Gene Expression Database. James-Zorn C , Ponferrada V , Fisher ME , Burns K , Fortriede J , Segerdell E, Karimi K , Lotay V , Wang DZ , Chu S , Pells T , Wang Y , Vize PD , Zorn A ., Methods Mol Biol. January 1, 2018; 1757 251-305.
