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| scheitel | stage 19 to larval development | |
| scheitel skeletogenic mesenchyme cell | stage 19 to larval development | |
| secondary oocyte | adult stage to undefined | |
| secondary podia | early juvenile stage to undefined | |
| secondary podia associated neuron | early juvenile stage to undefined | |
| secretory vesicle | 1-cell stage to 1-cell stage | |
| sensory neuron | stage 19 to undefined | |
| septate junction | undefined | |
| serotonergic neuron | stage 19 to competent pluteus larva stage | |
| short motile cilium | mid-blastula stage to undefined | |
| skeletal element | stage 14 to adult stage | |
| skeletal rod | stage 15 to early juvenile stage | |
| skeletal rod distal tip | stage 15 to adult stage | |
| skeletal rod distal tip skeletogenic mesenchyme cell | late gastrula stage to undefined | |
| skeletal rod middle portion | stage 15 to adult stage | |
| skeletal rod middle portion skeletogenic mesenchyme cell | undefined | |
| skeletal rod proximal tip | stage 15 to adult stage | |
| skeletal rod proximal tip skeletogenic mesenchyme cell | late gastrula stage to undefined | |
| skeletal rod skeletogenic mesenchyme cell | stage 15 to undefined | |
| skeletal tissue | stage 14 to undefined | |
| skeletogenic mesenchyme | early mesenchyme blastula stage to undefined | |
| skeletogenic mesenchyme cell | stage 12 to undefined | |
| skeletogenic mesenchyme cluster | stage 13 to adult stage | |
| skeletogenic mesoderm | early mesenchyme blastula stage to undefined | |
| skeletogenic mesoderm cell | stage 12 to undefined | |
| small micromere | stage 6 to undefined | |
| small micromere descendant cell | stage 8 to competent pluteus larva stage | |
| somatocoel | 6-arm pluteus larva stage to 8-arm pluteus larva stage | |
| sperm aster | mature spermatozoid stage to mature spermatozoid stage | |
| spermatid | adult stage to undefined | |
| spermatocyte | adult stage to undefined | |
| spermatogonium | adult stage to undefined | |
| spermatozoid | adult stage to spermatogenesis period | |
| spermatozoid entry point | adult stage to stage 1 | |
| spermatozoid flagellum | undefined | |
| spermatozoid head | undefined | |
| spermatozoid nucleus | adult stage to undefined | |
| spermatozoid part | adult stage to spermatogenesis period | |
| sphaeridium | early juvenile stage to adult stage | |
| sphincter | stage 19 to larval development | |
| sphincter cell | open mouth stage to larval development | |
| sphincter muscle | 4-arm pluteus larva stage to undefined | |
| sphincter muscle cell | 4-arm pluteus larva stage to undefined | |
| sphincter primordium | undefined to stage 18 | |
| spicule granule | undefined | |
| spicule rudiment | mid-gastrula stage to undefined | |
| spindle pole | undefined | |
| spine | 8-arm pluteus larva stage to adult stage | |
| stomach | stage 19 to undefined | |
| stomodeal ectoderm | stage 18 to stage 18 |
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