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| echinoderm anatomy | undefined | |
| echinonectin vesicle | mature oocyte stage to undefined | |
| ectoderm | 60-cell stage to metamorphic larva stage | |
| ectoderm presumptive neuron | mesenchyme blastula phase to prism stage | |
| ectoendoderm | 60-cell stage to very late blastula stage | |
| embryo | 1-cell stage to prism stage | |
| embryonic cell | 2-cell stage to prism stage | |
| embryonic digestive system | undefined to prism stage | |
| embryonic endoskeleton | undefined to prism stage | |
| embryonic immune system | undefined to prism stage | |
| embryonic muscular system | early pluteus stage to open mouth stage | |
| embryonic nervous system | undefined to prism stage | |
| embryonic non-skeletogenic mesenchyme | early gastrula stage to prism stage | |
| embryonic non-skeletogenic mesenchyme cell | early gastrula stage to prism stage | |
| embryonic non-skeletogenic mesoderm | very late blastula stage to late gastrula stage | |
| embryonic pigment cell | undefined to prism stage | |
| embryonic skeletogenic mesenchyme | early mesenchyme blastula stage to prism stage | |
| embryonic skeletogenic mesenchyme cell | early mesenchyme blastula stage to prism stage | |
| embryonic skeletogenic mesenchyme syncytium | early gastrula stage to prism stage | |
| embryonic skeletogenic mesoderm | 32-cell stage to very late blastula stage | |
| embryonic structure | 1-cell stage to prism stage | |
| embryonic territory | 16-cell stage to open mouth stage | |
| embryonic tissue | 16-cell stage to prism stage | |
| endoderm | mid-blastula stage to competent pluteus larva stage | |
| endoderm associated neuron | 4-arm pluteus larva stage to undefined | |
| endoderm associated presumptive neuron | prism stage to competent pluteus larva stage | |
| endoderm-associated neuron | early prism stage to larval development | |
| endomesoderm | 60-cell stage to very late blastula stage | |
| endoplasmic reticulum | undefined | |
| endoskeleton | mid-gastrula stage to adult stage | |
| enteric nerve plexus | late juvenile stage to undefined | |
| equatorial ectoderm | 60-cell stage to mesenchyme blastula stage | |
| equatorial pigment band | fully grown oocyte with centered germinal vesicle stage to prism stage | |
| extracellular matrix | 1-cell stage to adult stage |
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