Tutorial Videos
JBrowse tutorials
Video tutorials and documents for Echinobase are under development. Videos from our sister MOD, Xenbase, have been included in the meantime to demonstrate common JBrowse concepts.
| Title | Movie | Author | Content |
|---|---|---|---|
| Introduction to JBrowse | Vaneet Lotay | Selecting/deselecting tracks and categories, switching species and genome versions, and searching for a particular gene in the genome. | |
| JBrowse tutorial 1 | Vaneet Lotay | Using the JBrowse FeatureSequence plugin to highlight, copy, or hide parts of a gene sequence according to their type (UTR, intron, CDS), as well as view the upstream or downstream sequence for the gene. | |
| JBrowse tutorial 2 | Vaneet Lotay | Saving data from a track on JBrowse for a particular region of interest in the genome. | |
| JBrowse tutorial 3 | Vaneet Lotay | How to add a local/custom track from your PC to the JBrowse browser at Xenbase. | |
| JBrowse tutorial 4 | Vaneet Lotay | Exploring Xenbase GEO tracks with the faceted track selector in JBrowse. | |
| FlyBase JBrowse tutorial | FlyBase | Introduction to JBrowse at FlyBase: selecting/deselecting tracks, gene search...etc. |