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Tutorial Videos

JBrowse tutorials

Video tutorials and documents for Echinobase are under development. Videos from our sister MOD, Xenbase, have been included in the meantime to demonstrate common JBrowse concepts.
Title Movie Author Content
Introduction to JBrowse Vaneet Lotay Selecting/deselecting tracks and categories, switching species and genome versions, and searching for a particular gene in the genome.
JBrowse tutorial 1 Vaneet Lotay Using the JBrowse FeatureSequence plugin to highlight, copy, or hide parts of a gene sequence according to their type (UTR, intron, CDS), as well as view the upstream or downstream sequence for the gene.
JBrowse tutorial 2 Vaneet Lotay Saving data from a track on JBrowse for a particular region of interest in the genome.
JBrowse tutorial 3 Vaneet Lotay How to add a local/custom track from your PC to the JBrowse browser at Xenbase.
JBrowse tutorial 4 Vaneet Lotay Exploring Xenbase GEO tracks with the faceted track selector in JBrowse.
FlyBase JBrowse tutorial FlyBase Introduction to JBrowse at FlyBase: selecting/deselecting tracks, gene search...etc.